PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0102s0006.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 192aa MW: 21111.6 Da PI: 8.138

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0102s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	34	56	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C++ F++ L H++ H Kaladp0102s0006.1.p 34 FGCTYCKRGFTNAQALGGHMNIH 56 56*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.9E-5	28	60	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.13E-6	29	60	No hit	No description
PROSITE profile	PS50157	10.97	34	61	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	36	56	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MAETGKQLRC SGSPIDESDL AKEEGAAETG RRSFGCTYCK RGFTNAQALG GHMNIHRKDR 60 AKAKQRGTAA KKANCYADES NYMMSYRQIA PMSSCTTDIG YAQREQTQRM VSSRHHMYCP 120 ATVPSVFNQI PVGGNPDPIR PGLHFLGPPH LSLRVGSAAS NRVAWNKNSE DDHEEDNNIE 180 DVDLELRLGP R*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	3e-14	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0102s0006.1.p