PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0102s0102.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 219aa    MW: 23737.9 Da    PI: 6.5169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0102s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-1857107155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g
  Kaladp0102s0102.1.p  57 PVFRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAAMSIKG 107
                          579****998.**********843...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-1257107IPR001471AP2/ERF domain
PROSITE profilePS5103222.89358115IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-2158116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-3158116IPR001471AP2/ERF domain
SMARTSM003802.7E-3558121IPR001471AP2/ERF domain
PRINTSPR003676.8E-105970IPR001471AP2/ERF domain
CDDcd000183.32E-3259117No hitNo description
PRINTSPR003676.8E-108197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MIQPSFSSDT VESSCNSAES TQSKMGGIQN KKVKATTAAA AVKKRARGED KCESKHPVFR  60
GVRMRNWGKW VSEIREPRKK SRIWLGTFPT PEMAARAHDV AAMSIKGANA ILNFPELAGS  120
LPRPVSSSPR DVQAAAAKAA AMEHLNLSPS SSASSLTEAD DELCEIVQLP RLDEAADSGR  180
CEFLLMDYSG GGWVYPPLLM EDPIHAFDDA PLWSQDYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17541151072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026448877.16e-62ethylene-responsive transcription factor ERF043-like
SwissprotQ9LYD33e-53DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLB7FI904e-60B7FI90_MEDTR; Uncharacterized protein
STRINGXP_008220077.12e-59(Prunus mume)
STRINGEMJ269734e-59(Prunus persica)
STRINGXP_010249578.12e-59(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]