PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0131s0001.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 514aa MW: 59553.5 Da PI: 8.3876

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0131s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.1	6.9e-19	19	109	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHe 88 +f+ e++ ++GF+ r+ +s++s+++g ++ fvC+kegkr+ e++ ++r+raetrt+C+ kl +++e gk++v+ l+leHnH Kaladp0131s0001.1.p 19 EFWTEFGARTGFTPRRFYSHTSRKDGLPSSAVFVCNKEGKRNVESEL-IMKKRERAETRTSCQVKLGIHREPttFGKYRVYLLHLEHNHV 107 69***************************************9999.99999*************99889************9 PP FAR1 89 la 90 l Kaladp0131s0001.1.p 108 LH 109 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-14	19	109	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.7E-28	231	324	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MGHIPKLGMD FDSVEDAWEF WTEFGARTGF TPRRFYSHTS RKDGLPSSAV FVCNKEGKRN 60 VESELIMKKR ERAETRTSCQ VKLGIHREPT TFGKYRVYLL HLEHNHVLHT RATVHMMSSQ 120 RHITSIQANE IELADASGIQ IKRSHEFMSK RSGGVEGTGF IELDHKNFLR TRRQRELRYG 180 DAGSILSYFS QKTKENPFFF YDLQLDNEEQ ITNIFWADAK MRIDYGLFGD VASFDTTYST 240 NKESRPFGVF VGLNHHRSIV IFGAAILYDE TAASFEWLFQ SFLNCHSQKR PKTIFTDQDP 300 AMAKAICSVM QGTYHGLCTF HIMLNGIRHL GNLMKGGSSF LTHFQECMYG YNNEEAFEDA 360 WQSMVSKYYV QGNKWLLSIY KIKEKWASCY MKNVHSLGMR STQLSESCNA ELKRHLKSTF 420 SLARFFRTFE EVVRSKNYTN LKLEYESRER LPQMCNIYTP TIFKLFQMEI SNASAYLVTQ 480 RDQQVGQYDL KSFFDGDEAT VSFDRVNENI LCS*

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MGHIPKLGMD FDSVEDAWEF WTEFGARTGF TPRRFYSHTS RKDGLPSSAV FVCNKEGKRN  60
VESELIMKKR ERAETRTSCQ VKLGIHREPT TFGKYRVYLL HLEHNHVLHT RATVHMMSSQ  120
RHITSIQANE IELADASGIQ IKRSHEFMSK RSGGVEGTGF IELDHKNFLR TRRQRELRYG  180
DAGSILSYFS QKTKENPFFF YDLQLDNEEQ ITNIFWADAK MRIDYGLFGD VASFDTTYST  240
NKESRPFGVF VGLNHHRSIV IFGAAILYDE TAASFEWLFQ SFLNCHSQKR PKTIFTDQDP  300
AMAKAICSVM QGTYHGLCTF HIMLNGIRHL GNLMKGGSSF LTHFQECMYG YNNEEAFEDA  360
WQSMVSKYYV QGNKWLLSIY KIKEKWASCY MKNVHSLGMR STQLSESCNA ELKRHLKSTF  420
SLARFFRTFE EVVRSKNYTN LKLEYESRER LPQMCNIYTP TIFKLFQMEI SNASAYLVTQ  480
RDQQVGQYDL KSFFDGDEAT VSFDRVNENI LCS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023889885.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A151RX65	1e-180	A0A151RX65_CAJCA; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2N9I6R5	0.0	A0A2N9I6R5_FAGSY; Uncharacterized protein
STRING	XP_004305434.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-84	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0131s0001.1.p