PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0160s0001.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 167aa    MW: 18367.7 Da    PI: 8.0665
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0160s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.58.1e-37381302103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y++++d++++ ++sws+ +nsfvv+++ ef +++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk
  Kaladp0160s0001.1.p  38 FLCKTYDMVDDPSTDAVVSWSSGNNSFVVWNPPEFGRDLLPKYFKHSNFSSFVRQLNTYGFRKVHPDR---------WEFANEGFLRGKK 118
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++ikr+k +
  Kaladp0160s0001.1.p 119 HLLNTIKRRKAS 130
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-3633127IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-3934127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.2E-6234127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3238127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSNGADGGIS GTCRAESTQS VPAPVPVPMP NPNAPPPFLC KTYDMVDDPS TDAVVSWSSG  60
NNSFVVWNPP EFGRDLLPKY FKHSNFSSFV RQLNTYGFRK VHPDRWEFAN EGFLRGKKHL  120
LNTIKRRKAS QAPTQPQLEQ SQVQSPAATA CVEVGKFGLE EEVEKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-282913011123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028754642.12e-75heat shock factor protein HSF8-like
RefseqXP_028784445.12e-75heat shock factor protein HSF8-like
SwissprotQ9LQM73e-68HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A1S2YZS65e-74A0A1S2YZS6_CICAR; heat shock factor protein HSF8
STRINGEOY251601e-74(Theobroma cacao)
STRINGXP_004512501.19e-75(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.18e-64heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]