PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0167s0008.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 621aa    MW: 71626.4 Da    PI: 7.7612
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0167s0008.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.72.6e-201294290
                 FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                         fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++ +w++++ eleHnH ++
  Kaladp0167s0008.2.p 12 FYNCYAKDQGFGVRVSNTWYR-KSREKYRGKLSCSSAGYKRRSEAN-----RPRPETRTGCPAMIKFRLMESCRWRIIEAELEHNHLIS 94
                         9***************99997.66669*************998888.....***********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-171294IPR004330FAR1 DNA binding domain
PfamPF105511.0E-26213306IPR018289MULE transposase domain
PROSITE profilePS509669.421500536IPR007527Zinc finger, SWIM-type
SMARTSM005753.2E-6511538IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MEFETYEDVY YFYNCYAKDQ GFGVRVSNTW YRKSREKYRG KLSCSSAGYK RRSEANRPRP  60
ETRTGCPAMI KFRLMESCRW RIIEAELEHN HLISPVSGKF YKSHKQVGSS RTVLEDGAGE  120
APKARTFRTV VVDAGGDGNP QLQDVDKRVW VHDFNQLNLK EGDARAVHDF FRRSQLNDPQ  180
FFYAMDHNEK GTLRNVFWAD GRCRGAFKYF HDVVAIDTTC LTRKYAVPLV VFVGTNHHGQ  240
LIIFGCGLLA GETADSYTWL FRTWLTMMLG HPPQTIITNQ SKVLQAAISE VFPKASHLIS  300
LVHLMESYPC RFRGLFDSDA VRLDFNRAVY DSVKTEEFET AWERLTKRFG LLESDWFKTF  360
YEDRKRCVPV YVKDTFLAGL FPIQPTDSAP PMLLSYVHEK TSLTEFFVKY DEVAQTMNHM  420
ETMADVESRN GSCVLRSRCH FELQVSKLYT STVFKRFQDE VEAMYSCTST IQMNDDGPTE  480
THIVREHVPH DVNRSEAREF EVSYNPSEGD VKCICRLFNL KGYLCRHALC VLSQCGLVEI  540
PAQYLLSRWR KDIKRTYVVD HGHDSGTIDT RNPVNRHDHL CKVIVQIAEE GCKSRERYKL  600
ALQLLGEMMS RAKVVEDDGL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007215010.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLM5WRA10.0M5WRA1_PRUPE; Uncharacterized protein
STRINGEMJ162090.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6