PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0177s0003.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 270aa    MW: 30713.8 Da    PI: 9.2173
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0177s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox521.2e-16105159256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq   Le+ F+ + ++ ++++e LA++l+L  rqV vWFqNrRa+ k
  Kaladp0177s0003.1.p 105 RKKLRLNKEQSALLEDSFKLQTTLHQKQKEALARQLNLLPRQVEVWFQNRRARTK 159
                          5777899**********************************************98 PP
2HD-ZIP_I/II111.75e-36105194190
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+keq++lLE+sF+ +++L++++K++lar+L+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++enerL+ke ++L+++
  Kaladp0177s0003.1.p 105 RKKLRLNKEQSALLEDSFKLQTTLHQKQKEALARQLNLLPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCERLTNENERLRKELRALKQA 194
                          69*************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.01E-1695162IPR009057Homeodomain-like
PROSITE profilePS5007116.082101161IPR001356Homeobox domain
SMARTSM003896.5E-13103165IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-15105159IPR009057Homeodomain-like
CDDcd000861.51E-13105162No hitNo description
PfamPF000468.0E-14105159IPR001356Homeobox domain
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PfamPF021831.4E-9161193IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.3E-15161204IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSPPPPPPPL DGRGLLLGLA LRTAPVPPLG LSLSSTHDHH IISYDHQPSL TLSLLFPANK  60
LDDYDDDQIS SLSNSVNSVK RERAYGVANN NINDAYEDVS NNIIRKKLRL NKEQSALLED  120
SFKLQTTLHQ KQKEALARQL NLLPRQVEVW FQNRRARTKL KQTEVDCEFL KRCCERLTNE  180
NERLRKELRA LKQASQHQPF HKHLPTARLS MCPSCHSFTD LRNNPATASN NDISHPNFLT  240
SSEKHILFND PFVTKPTEQL KPYHSFSVM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138531.12e-59PREDICTED: homeobox-leucine zipper protein HAT22-like
RefseqXP_013692779.13e-59homeobox-leucine zipper protein HAT22-like
SwissprotP466044e-59HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A397L1K16e-58A0A397L1K1_BRACM; Uncharacterized protein
TrEMBLM4DMW65e-58M4DMW6_BRARP; Uncharacterized protein
STRINGBra017853.1-P9e-59(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-60HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]