PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0192s0026.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family DBB
Protein Properties Length: 221aa    MW: 23659.9 Da    PI: 7.6159
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0192s0026.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06447542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          C+ +e+ e++  C  ++  lC  C  + H        H++vpl
  Kaladp0192s0026.2.p  4 QCNVCESAEAKVLCCADEAALCWACDHKVHAAnklagkHQRVPL 47
                         7*****************************66899999999986 PP
2zf-B_box28.33.7e-095494337
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                         ++kC+ ++e    +fC +++ llC++C + +H +      H
  Kaladp0192s0026.2.p 54 MPKCDICQEAVGYFFCLEDRALLCRSCDVLIHTSnnmvslH 94
                         799*******9*********************765555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.381147IPR000315B-box-type zinc finger
CDDcd000216.27E-7347No hitNo description
SMARTSM003361.0E-8447IPR000315B-box-type zinc finger
SuperFamilySSF578451.51E-54595No hitNo description
SMARTSM003362.1E-135299IPR000315B-box-type zinc finger
PROSITE profilePS501198.8735293IPR000315B-box-type zinc finger
PfamPF006438.0E-75486IPR000315B-box-type zinc finger
CDDcd000214.20E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MKIQCNVCES AEAKVLCCAD EAALCWACDH KVHAANKLAG KHQRVPLSTT SSHMPKCDIC  60
QEAVGYFFCL EDRALLCRSC DVLIHTSNNM VSLHQRFLLT GVKVGLESAG VSQSSPAVKS  120
TSGQKTLQNE GHEAFKMKLP KSVPNSCSKV LATKVGGDAE TKLAEPPYSG GSSGGAISNW  180
MDDFFGLDDV DQNYAYMDEA SPKREVRGLR ARTGSRSVPG *
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538765.15e-82B-box zinc finger protein 22 isoform X1
RefseqXP_020538766.15e-82B-box zinc finger protein 22 isoform X2
SwissprotQ9SYM22e-72BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A445HUC56e-82A0A445HUC5_GLYSO; B-box zinc finger protein 22 isoform F
TrEMBLK7LWJ76e-82K7LWJ7_SOYBN; Uncharacterized protein
STRINGXP_009771048.15e-81(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.18e-75light-regulated zinc finger protein 1