PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0278s0008.4.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 843aa    MW: 96048.3 Da    PI: 9.3173
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0278s0008.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.1e-07196239346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rWT  Ed+ l+  vk+  + +W  Ia  +g++Rt+ qc  r+q 
  Kaladp0278s0008.4.p 196 RWTRTEDKELLLIVKEKEMSNWIDIAVSLGTNRTPFQCLARFQR 239
                          9***************************************9995 PP
2Myb_DNA-binding35.52.3e-11248291246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            W +eEd +l  av+ +G  +W  +a+ +  +Rt+ qc +rw k
  Kaladp0278s0008.4.p 248 REWEEEEDARLCAAVRVFGESNWQMVASVLD-KRTGTQCSNRWKK 291
                          68*****************************.***********98 PP
3Myb_DNA-binding43.76.5e-14301345247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          grWT +Ed++ +  vk++G ++W++Ia+ ++ gRt  qc++rw + 
  Kaladp0278s0008.4.p 301 GRWTIDEDKRMKVSVKLFGAKCWSKIAQFVP-GRTQVQCRERWVNC 345
                          8******************************.***********986 PP
4Myb_DNA-binding42.61.4e-13354395346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +WT++Ed++l  a++++    W+++a++++  Rt++qc+ rw  
  Kaladp0278s0008.4.p 354 PWTEDEDLKLMTAITEYNYC-WSKVAACIP-PRTDNQCRRRWMV 395
                          8*****************99.*********.9**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.33192188IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-492115IPR009057Homeodomain-like
SMARTSM007170.4493190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-4163188IPR009057Homeodomain-like
SuperFamilySSF466896.88E-14171242IPR009057Homeodomain-like
PROSITE profilePS500908.362189241IPR017877Myb-like domain
SMARTSM007171.1E-4193243IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-11196249IPR009057Homeodomain-like
PfamPF139216.9E-11197258No hitNo description
SuperFamilySSF466892.21E-17226295IPR009057Homeodomain-like
PROSITE profilePS5129413.49242293IPR017930Myb domain
SMARTSM007171.4E-10246295IPR001005SANT/Myb domain
CDDcd001671.03E-8249293No hitNo description
Gene3DG3DSA:1.10.10.605.3E-15250296IPR009057Homeodomain-like
PROSITE profilePS5129419.779294350IPR017930Myb domain
SuperFamilySSF466896.24E-26297393IPR009057Homeodomain-like
SMARTSM007172.2E-10299348IPR001005SANT/Myb domain
PfamPF002492.7E-12301345IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-18301351IPR009057Homeodomain-like
CDDcd001671.19E-9302344No hitNo description
SMARTSM007178.0E-10351399IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-16352396IPR009057Homeodomain-like
PROSITE profilePS5129414.036353401IPR017930Myb domain
PfamPF002491.2E-11354394IPR001005SANT/Myb domain
CDDcd001675.98E-10354396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MNPRCFQSRV QIEARIEESK KLKDRVKILK DFQVSTRKRV GLVLSQKKDH RVQLISAPKR  60
GEKKASAMKF GPEDNRDVAF YKDAITKFPL ALQRQRWSNE ERDNLRKGIK QEFQKALLEK  120
SVDLISYSEG SYGISSDIDN VMASIKGLEI TPENIRAYLP KVNWDNFASI YHQGRSGAEC  180
EARWLNWEDP LRNNTRWTRT EDKELLLIVK EKEMSNWIDI AVSLGTNRTP FQCLARFQRS  240
LNAQMVKREW EEEEDARLCA AVRVFGESNW QMVASVLDKR TGTQCSNRWK KSLNPARVRV  300
GRWTIDEDKR MKVSVKLFGA KCWSKIAQFV PGRTQVQCRE RWVNCLDPSL NWDPWTEDED  360
LKLMTAITEY NYCWSKVAAC IPPRTDNQCR RRWMVLCPDD VYRLQAAKKI QQVALISNFV  420
DRETERPDLG PEDFVPPLIL CPAFEPYSEE PTNKRKRKRR EKRASPMNNA EYNMGCSDSQ  480
KKKRCPRRRK EAQVDNEATL GAVDVNEATE AVICLNEYVG TVENSTIVHP GSFECNEQGK  540
ADSSLYLELE PTDTGDEGKC GRSNYLKRKK YKPRRKARAE NVPVQSKAFL PAAQSESMLM  600
NHSFSHEIPV ENNTTSTQKR RTTIKQNKKK SCSIYKKNDY EFAAGTLSLQ MQTPDKSASI  660
PGAIVATSKS CKRERVTASS SLKDAVSFHR PSSCSCCLES IVCHQGAVNG TRVNGELIAG  720
KAAACLEEND FIPLASLGKR DKNFSQNEAE YAQEANSRSE MNNKFCCEQP ATSLGEDDSL  780
ALTSFIKRKR NVCNARIENG HNVDKGRKME IISVEQVGAG LNEDDIPLAL FIKKVKRVKE  840
KI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-281953932151MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-281953932151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1453459KRKRKRR
2454459RKRKRR
3454462RKRKRREKR
4456461RKRREK
5485489PRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278062.20.0PREDICTED: snRNA-activating protein complex subunit 4 isoform X2
TrEMBLA0A2N9GBE50.0A0A2N9GBE5_FAGSY; Uncharacterized protein
STRINGcassava4.1_000461m0.0(Manihot esculenta)
STRINGXP_010243797.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-147myb domain protein 4r1