PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0337s0008.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 444aa    MW: 49344.8 Da    PI: 4.791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0337s0008.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12258301755
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          ++Er+RR+++N+++ +Lr+l+Pk +      Kl+ a+iL  A++++k+Lq
  Kaladp0337s0008.3.p 258 IAERKRRKKLNERLYKLRSLVPKiS------KLDRASILGDAIDFLKELQ 301
                          79*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-142142IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.796251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16253315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-13253305No hitNo description
SMARTSM003531.2E-14257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-10257301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-15258314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEQLRTLVSV HGWECCVVWR VSKDQRFIEW LDCCCAGAEN LPQEPTFAAS QCRDSVILHS  60
RTKACDLLAQ FPPFMLIEDS GVYAETLISN QPRWLHLSQS STSADMVPQF ATRLLIPVPG  120
GLIELFAARP VSENQHIIDC IAEYSKLPPE KEANSISSTD MTAFYNEISL FGPKFETTNS  180
TDIFFDEFMN QLYNSSVKDG LLQGMDSMLV SDVSNTGVPV KGSGNDRGQQ GHDVMEAAGN  240
IEMGRKKSGK GPQSKNLIAE RKRRKKLNER LYKLRSLVPK ISKLDRASIL GDAIDFLKEL  300
QKQKKDLEDE LQQQQSDDEY HHEDTNPFLG QTEDTMDQDQ LEAQVEVSKI DGGDALFIKL  360
LCENKPGSFV GVLEALDHLG LEVTNVNINT HETFVSNVLL VQGKEGSCVM VEADSVKDSL  420
LSTTRNSIPT GSLRRPNLAA RQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244265RKKSGKGPQSKNLIAERKRRKK
2259266ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464202.11e-105transcription factor ABORTED MICROSPORES isoform X3
STRINGPOPTR_0009s13860.11e-104(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-61bHLH family protein