PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0375s0002.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 326aa MW: 34759.3 Da PI: 8.3866

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0375s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	53	113	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+ l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s Kaladp0375s0002.1.p 53 KEQPLPCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSP 113 67899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	51	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.4E-33	55	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.376	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MNAAQWQQQE IVVKPVEELI PSSNICSSSK ANNSSGGGGA EKKAAGTVVR PSKEQPLPCP 60 RCNSTNTKFC YYNNYSLTQP RYFCKGCRRY WTEGGSLRNI PVGGGSRKNK RSPSSTSSAP 120 PGVAAKKLFV HPSSLQNPNS MIHQPERAGH DLNLSFPNHH QDYRSMSDFV HLPIISSQTS 180 ATTTATSHLS ALELLTGMTS RGGVGGGFSN AFMPISDPDS VYSSTSFSNF MHDFKPPTLN 240 FSLDNGLGIG QSGSAGFTHS DQISTSGGGG GGRVLVSPFD DLKNEHQADD HHHQHQQQAE 300 QNRGHGVVST GYWTGMLGGG SGSDW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439815.1	6e-80	PREDICTED: dof zinc finger protein DOF4.6 isoform X1
TrEMBL	A0A0D2U9N9	1e-78	A0A0D2U9N9_GOSRA; Uncharacterized protein
STRING	VIT_02s0025g02250.t01	4e-79	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	3e-45	Dof family protein

Link Out ? help Back to Top
Phytozome	Kaladp0375s0002.1.p