PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0401s0003.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 143aa    MW: 17040.2 Da    PI: 9.012
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0401s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.1e-08801241354
                          HHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  13 eeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +L++  +   k +yp+++++++L +++gL+ +q+ +WF N+R +
  Kaladp0401s0003.1.p  80 SVLKNWWQqhsKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 124
                          55666666222469*****************************87 PP
2ELK26.91.1e-094566122
                  ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                         ELK +L++++++++ ++++E++
  Kaladp0401s0003.1.p 45 ELKIELKQGFKSRIEDVREEIL 66
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.1324565IPR005539ELK domain
PROSITE profilePS5007111.72665128IPR001356Homeobox domain
SMARTSM003899.2E-1167132IPR001356Homeobox domain
SuperFamilySSF466898.13E-1767131IPR009057Homeodomain-like
CDDcd000869.89E-1068127No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2572128IPR009057Homeodomain-like
PfamPF059203.0E-1885124IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MSDEEDEDED LELHHHHHHS SNDMIMGFGL PTESERTLME RVRQELKIEL KQGFKSRIED  60
VREEILRKRR AGKLPSDTTS VLKNWWQQHS KWPYPTEDDK AKLVEETGLQ LKQINNWFIN  120
QRKRNWHVAS QSVTSLKSKR KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-1468124864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121141RKRNWHVASQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtPossible developmental regulator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083215.14e-79homeobox protein HD1
RefseqXP_016567895.14e-79PREDICTED: homeobox protein knotted-1-like 7
SwissprotP466062e-72HD1_BRANA; Homeobox protein HD1
TrEMBLA0A2G2XKA57e-78A0A2G2XKA5_CAPBA; Homeobox protein knotted-1-like 7
STRINGSolyc08g080120.2.12e-78(Solanum lycopersicum)
STRINGXP_009617782.12e-78(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.19e-75KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]