PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0418s0008.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 310aa    MW: 34846.9 Da    PI: 6.6465
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0418s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-151664148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l +++ ++Gg+ +W++++ ++g+ R +k+c++rw +yl
  Kaladp0418s0008.1.p 16 KGLWSPEEDEKLRNYILRHGGHgSWSSVPIEIGLQRNGKSCRLRWINYL 64
                         678******************9*************************97 PP
2Myb_DNA-binding51.32.7e-1670115148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++t+E+e ++ +++ lG++ W+ Ia++++ gRt++++k++w+++l
  Kaladp0418s0008.1.p  70 RGMFSTDEEEMILALHRDLGNK-WSQIAQKLP-GRTDNEIKNYWHTHL 115
                          788*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7481164IPR017930Myb domain
SuperFamilySSF466891.05E-2613111IPR009057Homeodomain-like
SMARTSM007174.3E-101566IPR001005SANT/Myb domain
PfamPF002491.1E-131664IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-201771IPR009057Homeodomain-like
CDDcd001678.48E-91964No hitNo description
PROSITE profilePS5129424.55465119IPR017930Myb domain
SMARTSM007171.7E-1469117IPR001005SANT/Myb domain
PfamPF002494.2E-1470115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2572118IPR009057Homeodomain-like
CDDcd001671.49E-1173115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MALDKPKKVP KPKHRKGLWS PEEDEKLRNY ILRHGGHGSW SSVPIEIGLQ RNGKSCRLRW  60
INYLRPGLKR GMFSTDEEEM ILALHRDLGN KWSQIAQKLP GRTDNEIKNY WHTHLKKRSA  120
RAFSLAPKTS QELINSWSTS VSSSLSSPTS YSSKPLTQVP ISFEFCHTFR ASSACTEPAV  180
DDHDHHTMLS SGLNGFPNDG IQSSLPKLFF EEWLSLDRTN TSNQQLNPSD DQLAAASILM  240
GDTFMDNEFL QHERSSALDF ESGQGGNWAN DIVSYPDLCL DGSLADGCFN FGISNDHDEF  300
SGFKYVMYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-20711818127MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022774162.12e-73transcription factor LAF1-like
STRINGXP_006490473.11e-70(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.13e-56myb domain protein 18