PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0418s0009.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 155aa    MW: 17676.9 Da    PI: 10.7362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0418s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-161058148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEde+l +++ ++Gg+ +W++++ ++g+ R +k+c++rw +yl
  Kaladp0418s0009.1.p 10 RGLWSPEEDEKLRNYILRHGGHgSWSSVPVEIGLQRNGKSCRLRWINYL 58
                         788******************9*************************97 PP
2Myb_DNA-binding506.9e-1664109148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++t E+e +  +++ lG++ W+ Ia++++ gRt++++k++w+++l
  Kaladp0418s0009.1.p  64 RGMFSTAEEETIMALHRDLGNK-WSQIAQKLP-GRTDNEIKNYWHTHL 109
                          788*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.815558IPR017930Myb domain
SuperFamilySSF466898.24E-277105IPR009057Homeodomain-like
SMARTSM007175.2E-10960IPR001005SANT/Myb domain
PfamPF002494.5E-141058IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-211165IPR009057Homeodomain-like
CDDcd001671.46E-81358No hitNo description
PROSITE profilePS5129424.31759113IPR017930Myb domain
SMARTSM007171.1E-1263111IPR001005SANT/Myb domain
PfamPF002498.3E-1464109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2566112IPR009057Homeodomain-like
CDDcd001678.31E-1067109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGSEKPKHRR GLWSPEEDEK LRNYILRHGG HGSWSSVPVE IGLQRNGKSC RLRWINYLRP  60
GLKRGMFSTA EEETIMALHR DLGNKWSQIA QKLPGRTDNE IKNYWHTHLK KRIGGTFSSA  120
PKTSQELINS WSTNVSSTFS SPNYSSKPLT QVPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-2161133108B-MYB
1h8a_C1e-20611323128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021648305.12e-64transcription factor LAF1-like
SwissprotQ9M0K42e-55LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A218WTD03e-62A0A218WTD0_PUNGR; Uncharacterized protein
STRINGcassava4.1_031686m2e-62(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-57myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]