PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0427s0038.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 361aa    MW: 40823.3 Da    PI: 4.869
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0427s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1171.2e-36421332102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+i+++++++++isws+ +nsfvv+d++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g++
  Kaladp0427s0038.1.p  42 FLTKTYDIVDNQSTNHIISWSSGNNSFVVWDPQAFAMTLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEEFLRGQR 122
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+++
  Kaladp0427s0038.1.p 123 HLLSNIRRRRT 133
                          ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3938131IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.01E-3638131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-6138131IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDRNYGGEGA SSDLGGGGSS SSKSAQIPVP MEGLHQAGPP PFLTKTYDIV DNQSTNHIIS  60
WSSGNNSFVV WDPQAFAMTL LPRYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEEFLRG  120
QRHLLSNIRR RRTSGSSPQT PFPLSQQSAD ACVEVGLFGS LDKEIDRLKR DKQMLMLEMA  180
KIRQQQKSNK TYLASMEQRL RGTEMKQQQL MRFLAKAIRN PAFMQQLIQQ RELRKNNLLV  240
DAANKRRHID QGPSDIGETV TKTEPFEDQY INFETPQQQL NMMLGGTDLQ SAGFSEPEGD  300
QTPHMAVGDE QERSLDELFW DQFLNDNNTG EDLSFMGGDG EDDTEENLFI SDHFGDQGSS  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-263713612125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118131RGQRHLLSNIRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0418772e-32BT041877.1 Zea mays full-length cDNA clone ZM_BFb0071P12 mRNA, complete cds.
GenBankBT0884102e-32BT088410.1 Zea mays full-length cDNA clone ZM_BFc0182A01 mRNA, complete cds.
GenBankEU9569232e-32EU956923.1 Zea mays clone 1577511 heat shock factor protein HSF30 mRNA, complete cds.
GenBankJX4284942e-32JX428494.1 Zea mays subsp. mays clone pUT3092 HSF11 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606861.11e-118heat stress transcription factor A-6b-like
SwissprotQ6VBB21e-102HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A2C9W9T21e-117A0A2C9W9T2_MANES; Uncharacterized protein
STRINGcassava4.1_029306m1e-118(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-101heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]