PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0433s0008.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 285aa    MW: 31654.4 Da    PI: 9.1511
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0433s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.2e-12556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT+eE+e l+ +++++G g Wk I           +Rt  ++k++w+++
  Kaladp0433s0008.1.p  5 KLKWTAEEEEALLSGIARHGAGKWKNILTDPEfapvfSKRTNIDLKDKWRNL 56
                         689****************************9*****88***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.031161IPR017930Myb domain
SuperFamilySSF466892.44E-15259IPR009057Homeodomain-like
SMARTSM007171.5E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-13557IPR009057Homeodomain-like
PfamPF002491.6E-8556IPR001005SANT/Myb domain
CDDcd116601.21E-18757No hitNo description
Gene3DG3DSA:1.10.10.108.9E-14114179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.8E-16115180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.108117185IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.08E-14118184IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005389.1E-12119178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGNPKLKWTA EEEEALLSGI ARHGAGKWKN ILTDPEFAPV FSKRTNIDLK DKWRNLTVSS  60
TGHHGMKDKT RIPKLKSLMA STSSNAQRNE SLAVVPHETP LDVVMEDAPN GTHEPKNAPK  120
YNDMIFEAIS AAKDAKGLDI NAIITFIEKK QEVPPNFRRL LSSKLRRLVT QGKLDKVQNC  180
YIIKKDMLPL SLPESKTSLA PAQKETRLQH PRTNGHAMVD TAMEEASISA AYKIADAENK  240
SFLASEAVKE SERVMKMCED TECLLQIAKE IHERCSQGKI VLLA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021294179.11e-103telomere repeat-binding factor 4
SwissprotF4I7L12e-77TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A200QD611e-105A0A200QD61_9MAGN; SANT/Myb domain
STRINGEOY271611e-102(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-79MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]