PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0441s0001.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 227aa    MW: 25511.5 Da    PI: 7.5033
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0441s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-172670147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Kaladp0441s0001.2.p 26 RGNISEDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 70
                         7899******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.623120IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-11632IPR009057Homeodomain-like
SuperFamilySSF466894.01E-20675IPR009057Homeodomain-like
PROSITE profilePS5129425.8712175IPR017930Myb domain
SMARTSM007174.8E-162573IPR001005SANT/Myb domain
PfamPF002494.2E-152670IPR001005SANT/Myb domain
CDDcd001677.06E-133071No hitNo description
Gene3DG3DSA:1.10.10.603.4E-213371IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSAGLNRCGK SCRLRWLNYL RPDIKRGNIS EDEEELIIRL HKLLGNRWSL IAGRLPGRTD  60
NEIKNYWNTT LGKKVGSEVS QRSSSKKGKM SKSKETSKAV PEPDSSTQPL TQPIRTKAFR  120
CTKVHIPATI HSPREDYNKH EDTKPTHSQS AQQTSSPDSG EYVVDFSQFL DFGSDEFQGI  180
DTCMGFNGQF DVPVTKDWMR SDISGLENSS MELESLGFLL DGEGWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2177740110B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220562.17e-60PREDICTED: myb-related protein Zm38-like
TrEMBLA0A2N9ET875e-60A0A2N9ET87_FAGSY; Uncharacterized protein
STRINGXP_008220562.13e-59(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-40MYB family protein