PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0488s0024.4.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 462aa    MW: 52173.3 Da    PI: 8.1985
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0488s0024.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.61.5e-2176159189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          ++Yn YAke+GF vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w++ ++ l+HnH l
  Kaladp0488s0024.4.p  76 NYYNCYAKEAGFCVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRIVEVTLDHNHLL 159
                          69*****************************************9988.....99*********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1976159IPR004330FAR1 DNA binding domain
PfamPF105511.8E-30278371IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEVISLGSEQ VLDIESNEAG LEREGGVVEL DGQSYKSLER DGLSELDGEN AACQPRKEFV  60
APAVGMEFES YDDVYNYYNC YAKEAGFCVR VKNSWFKRNS KEKYGAVLCC SSQGFKRIKD  120
VNRLRKETRT GCPAMIRMRL VDSKRWRIVE VTLDHNHLLG SRVHKSVKRL TNCTKRKLNS  180
NSDAEVRTIK LYHALVVDAG GDGSCNVIGR EARTQSSKPD QLCLKKGDSQ SVYNYFCRMQ  240
MSNSNFFHSV DFNVDGLLRN VFWADARSRA ACGYFGDVVR FDSTYLSSKY ETPLVTFVGL  300
NHHGQSVLLG CGLLSNETTE SYVWIFKTWA ACMNGHTPQT IITDRCLCLQ TAISQVFPRS  360
HHRFGLFDIM RRVPEKLGGL RNYDAIRKAL FKAVYETLKV GEFEGAWGFM VHHFGVADNE  420
WLQSLYKDRV LWAPVCLKDT FFAGIAAASQ EETQGGISCR Y*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263979.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
RefseqXP_019077918.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
RefseqXP_019077919.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
RefseqXP_019077920.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
RefseqXP_019077921.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A2N9G4Y60.0A0A2N9G4Y6_FAGSY; Uncharacterized protein
STRINGVIT_09s0002g07400.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]