PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0500s0002.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GATA

Protein Properties

Length: 162aa MW: 17710.4 Da PI: 10.4896

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0500s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	26.4	9.4e-09	19	40	1	22
GATA 1 CsnCgttkTplWRrgpdgnktL 22 C+ Cgt TplWR+gp g+k L Kaladp0500s0002.1.p 19 CAMCGTARTPLWRSGPAGPKDL 40 9******************966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	8.08E-8	11	73	No hit	No description
SMART	SM00401	6.6E-6	13	81	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	9.2E-10	13	80	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	8.708	13	36	IPR000679	Zinc finger, GATA-type
CDD	cd00202	6.55E-8	18	66	No hit	No description
Pfam	PF00320	2.6E-6	19	40	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MDLSQKETAM LSDETKKRCA MCGTARTPLW RSGPAGPKDL TTDNASWFQF LQSLCNACGI 60 KQRKRKALMC KNPDKKKQRQ PTTTNPAASP PSTSTEPPSK SKPGLEKSCA TNSRQSVKVG 120 LAAFGKDLAL LQRQRSLRRQ RSEEEEAAML LMSLSCSYVL G*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06740.1	4e-15	GATA transcription factor 15

Link Out ? help Back to Top
Phytozome	Kaladp0500s0002.1.p