PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0515s0031.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 713aa MW: 82863.4 Da PI: 6.9705

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0515s0031.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.5	1.1e-23	100	190	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 Y+++A+++GFs+rk++s++s++ g +++r++vC+++g+++++kk+++++ r+r++ r+gC+ak+ ++ke ++w+v+++++ HnHe Kaladp0515s0031.1.p 100 HYSNFARKTGFSIRKARSTESHNLG-VYRRDYVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKMYLTKEIvdgVAQWYVSQFSNIHNHE 188 6******************7777.**************************************998766789*********** PP FAR1 89 la 90 l Kaladp0515s0031.1.p 189 LL 190 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-21	100	190	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-23	322	414	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.507	593	625	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-7	595	621	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.6E-4	600	627	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MMKSLTNHDV FCQSVPVFFL ELIFQKINAT MKPSNNIWIR RQQCPCGDWK CYIRYEGDDH 60 TASGSQLVKM ETYSSQSSYA PSFTPYVGQI YKTDTDAFQH YSNFARKTGF SIRKARSTES 120 HNLGVYRRDY VCYRSGFNQP RKKANVEHPR ERKSVRCGCD AKMYLTKEIV DGVAQWYVSQ 180 FSNIHNHELL EDDQVRLLPA YRKIQEADQE RILLLSKAGF PVNRIVKVLE LEKGVQPGQL 240 PFIEKDVRNF VRTCKKTIQE NDTLLTEKRE NDTLEFLEAC KAMAEKDFEF VYDYSTDENG 300 KVENIAWSYG QSVCAYTMFG DVVFFDTAYH SITYGLLLGT WFGMDNHGKP ILLGCVLLQD 360 ETSRSFAWAF QSFHRFMRGR QPQTIVTDMD TAIIHAVANE LPNTKHVICL WHIISKLSSW 420 FTVPLGLHYG DFRSEFEATC FLERIEEFEH QWNHLVTQYE LGSDKHMVLL YTYREYWPFC 480 YINNYFLARM VTKEFLKSMS TFLKKILSSQ SCLQGFFEEI ATAVSIDYQK NDDIQYTYIK 540 TCMPVEEHAR SILTPYAFSV LQNELVLSMQ YEITDMPDGS YHLRHYKGLD KALVIRAEPI 600 QCSCKAFDYS GILCRHCLRI LVLKNCFQLP ETYFLPRWRS DSNFYSVDNQ NQQTGTDERV 660 QAFHTLSTSL LSESIMTRER FNYVRRELSG LLENVRNMPA IIEAAVLGSL AG*

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MMKSLTNHDV FCQSVPVFFL ELIFQKINAT MKPSNNIWIR RQQCPCGDWK CYIRYEGDDH  60
TASGSQLVKM ETYSSQSSYA PSFTPYVGQI YKTDTDAFQH YSNFARKTGF SIRKARSTES  120
HNLGVYRRDY VCYRSGFNQP RKKANVEHPR ERKSVRCGCD AKMYLTKEIV DGVAQWYVSQ  180
FSNIHNHELL EDDQVRLLPA YRKIQEADQE RILLLSKAGF PVNRIVKVLE LEKGVQPGQL  240
PFIEKDVRNF VRTCKKTIQE NDTLLTEKRE NDTLEFLEAC KAMAEKDFEF VYDYSTDENG  300
KVENIAWSYG QSVCAYTMFG DVVFFDTAYH SITYGLLLGT WFGMDNHGKP ILLGCVLLQD  360
ETSRSFAWAF QSFHRFMRGR QPQTIVTDMD TAIIHAVANE LPNTKHVICL WHIISKLSSW  420
FTVPLGLHYG DFRSEFEATC FLERIEEFEH QWNHLVTQYE LGSDKHMVLL YTYREYWPFC  480
YINNYFLARM VTKEFLKSMS TFLKKILSSQ SCLQGFFEEI ATAVSIDYQK NDDIQYTYIK  540
TCMPVEEHAR SILTPYAFSV LQNELVLSMQ YEITDMPDGS YHLRHYKGLD KALVIRAEPI  600
QCSCKAFDYS GILCRHCLRI LVLKNCFQLP ETYFLPRWRS DSNFYSVDNQ NQQTGTDERV  660
QAFHTLSTSL LSESIMTRER FNYVRRELSG LLENVRNMPA IIEAAVLGSL AG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021291814.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021291815.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021291816.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021291817.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021291818.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021291819.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A1R3JBG2	0.0	A0A1R3JBG2_COCAP; Uncharacterized protein
STRING	VIT_12s0057g00960.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Kaladp0515s0031.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]