PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0515s0238.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 353aa    MW: 38794.1 Da    PI: 8.3436
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0515s0238.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-18195228134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+tt TplWR+gp+g+k+LCnaCG+++rk +
  Kaladp0515s0238.1.p 195 CSDCNTTRTPLWRSGPQGPKSLCNACGIRQRKAR 228
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.637189225IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-13189229No hitNo description
SMARTSM004019.9E-20189241IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-15193229IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.03E-13194226No hitNo description
PROSITE patternPS003440195220IPR000679Zinc finger, GATA-type
PfamPF003202.0E-16195228IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMTPIFLNPP NTQYFDLNNQ DHHQEDQLQQ VLLASSPFCP TIAASSTSIH LDQGLRISAT  60
HIMSDQSHAF NDQLEASKNV FSFGESPPYE AQMTNTDNYG SHNRDLFIFK QQEDQEQNNL  120
RGTGGNMTAD SNGSSLRWMS SRMRMMRKMI NSNGPKIDPR GGSRIITSST SPDHSPQVGI  180
NSDNNNNNHN MIRVCSDCNT TRTPLWRSGP QGPKSLCNAC GIRQRKARKA AMEAAAAAAT  240
NSSCEASSST STKTTIKLMI NKDKKKSRAT SNTCVSQHSN KKQTPCKQQA SQLADSDHNN  300
SSISSSRKQQ LSFEEFAVNL LSKNAAFHHM FPQDEEEGAL LLMALSCGLI QS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022730986.16e-44GATA transcription factor 21
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-18GATA family protein