PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0550s0016.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 508aa MW: 55747.3 Da PI: 7.8899

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0550s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	231	273	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le +L++ ++L+ Kaladp0550s0016.1.p 231 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQDLQ 273 5889*************************98888887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	228	304	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.197	230	274	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.3E-8	231	273	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.38E-7	232	275	No hit	No description
CDD	cd14708	4.10E-22	232	283	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.2E-8	233	277	No hit	No description
PROSITE pattern	PS00036	0	235	250	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.1E-31	312	387	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MANHQTRVVG SGLSDSSGPS NHHMSPFASL LHHQQHPNGI VAHASSSTGF IHQERSAFDF 60 GELEEAIVLQ GAAQFRDDEA KASLFSGRPA ATLEMFPAWP MRFQQAQQRG SSRSGGDYCT 120 DSGSALNTLS SKGGGGDQAR FDQESPISRK PSSSSVGHHR QQQQHQQLQQ HQQAVVGDMM 180 TGDHDNSTRT GVATIAEPGG YLNQQPSSSS ARPISEKKKG VGSTSERILD AKTLRRLAQN 240 REAARKSRLR KKAYVQQLES SRIKLSQLEQ DLQRTRSQGY FLGAGGAGAS ISSGAAMFDM 300 EYARWLDDDL RHMADLRTAL QAHLSEGDLQ VIIDDHLSHY DEIFQLKAVA AKTDVFHLIT 360 GMWATPAERC FLWMGGFRPS ELIKIVIPQA DPLTEQQVLG IYSLQHSSQQ AEEALSQGLD 420 QLQQSLVDTI AGGPVVMDGM HQMATALGKL SNLEGFVRQA DNLRQQTLHQ LRRILTVRQA 480 ARCFLAIGEY YGRLRALSSL WASRPRE*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MANHQTRVVG SGLSDSSGPS NHHMSPFASL LHHQQHPNGI VAHASSSTGF IHQERSAFDF  60
GELEEAIVLQ GAAQFRDDEA KASLFSGRPA ATLEMFPAWP MRFQQAQQRG SSRSGGDYCT  120
DSGSALNTLS SKGGGGDQAR FDQESPISRK PSSSSVGHHR QQQQHQQLQQ HQQAVVGDMM  180
TGDHDNSTRT GVATIAEPGG YLNQQPSSSS ARPISEKKKG VGSTSERILD AKTLRRLAQN  240
REAARKSRLR KKAYVQQLES SRIKLSQLEQ DLQRTRSQGY FLGAGGAGAS ISSGAAMFDM  300
EYARWLDDDL RHMADLRTAL QAHLSEGDLQ VIIDDHLSHY DEIFQLKAVA AKTDVFHLIT  360
GMWATPAERC FLWMGGFRPS ELIKIVIPQA DPLTEQQVLG IYSLQHSSQQ AEEALSQGLD  420
QLQQSLVDTI AGGPVVMDGM HQMATALGKL SNLEGFVRQA DNLRQQTLHQ LRRILTVRQA  480
ARCFLAIGEY YGRLRALSSL WASRPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015872803.1	0.0	transcription factor TGA9 isoform X2
Refseq	XP_024926308.1	0.0	transcription factor TGA9 isoform X2
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2I4KKY6	0.0	A0A2I4KKY6_POPTR; BZIP family protein
STRING	EOY33449	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-148	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kaladp0550s0016.1.p

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]