PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0550s0016.3.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 330aa MW: 36578.5 Da PI: 9.003

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0550s0016.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.3e-11	53	95	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le +L++ ++L+ Kaladp0550s0016.3.p 53 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQDLQ 95 6889*************************98888887777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	50	126	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.197	52	96	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.1E-8	53	95	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.89E-7	54	97	No hit	No description
CDD	cd14708	1.88E-21	54	105	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.3E-8	55	99	No hit	No description
PROSITE pattern	PS00036	0	57	72	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.0E-31	134	209	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MMTGDHDNST RTGVATIAEP GGYLNQQPSS SSARPISEKK KGVGSTSERI LDAKTLRRLA 60 QNREAARKSR LRKKAYVQQL ESSRIKLSQL EQDLQRTRSQ GYFLGAGGAG ASISSGAAMF 120 DMEYARWLDD DLRHMADLRT ALQAHLSEGD LQVIIDDHLS HYDEIFQLKA VAAKTDVFHL 180 ITGMWATPAE RCFLWMGGFR PSELIKIVIP QADPLTEQQV LGIYSLQHSS QQAEEALSQG 240 LDQLQQSLVD TIAGGPVVMD GMHQMATALG KLSNLEGFVR QADNLRQQTL HQLRRILTVR 300 QAARCFLAIG EYYGRLRALS SLWASRPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024017016.1	1e-179	LOW QUALITY PROTEIN: transcription factor TGA9
Swissprot	Q93XM6	1e-165	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1Q3D847	1e-178	A0A1Q3D847_CEPFO; BZIP_1 domain-containing protein/DOG1 domain-containing protein
STRING	XP_010031514.1	1e-176	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-150	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kaladp0550s0016.3.p

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]