PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0550s0040.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 252aa MW: 27066.2 Da PI: 6.6887

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0550s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg Fs+ L H+r+H Kaladp0550s0040.1.p 151 HQCSVCGSEFSSGQALGGHMRRH 173 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.452	84	111	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.6E-6	84	106	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.02E-8	84	106	No hit	No description
SMART	SM00355	0.4	84	106	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.02E-8	146	173	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.8E-4	149	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.3E-11	150	175	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.723	151	173	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	151	173	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	153	173	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MELPEHEATA VAAPVHQEPL TLSIDRGNRA NRPSRVSSDE EERRICDSVV TEEEQDLANC 60 LILLARAELV RGGKRKLADL GGCHECKACN KTFPSFQGLY GHRAGHGKPR SEINDCDAEK 120 QLSTSLQLST TNSRNGNVSS VKASALSNRV HQCSVCGSEF SSGQALGGHM RRHRAVPAPV 180 RSPCTGVSSP ATSMGEVKTL SVFSLDLNLP APEESEIDHQ RGLEDEQNAA CFQQNTPVFS 240 AHAHALLGCH H*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	3e-33	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0550s0040.1.p