PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0550s0052.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 742aa    MW: 81882.9 Da    PI: 7.0499
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0550s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-095756121954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Kaladp0550s0052.1.p 575 FEHflHPYPTDTDKHLLATQTGLTRSQVSNWFINARVR 612
                          664459******************************88 PP
2BELL99.92e-32428497372
                 BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           + q kkakLl +l+eV +rY+qy++q+q+v+s+Fe vagl +a+pY+s Alk++SrhF  Lk ai++q+
  Kaladp0550s0052.1.p 428 PDYQLKKAKLLYMLDEVTRRYRQYYHQMQMVVSAFESVAGLAAATPYVSSALKTVSRHFNHLKHAISDQL 497
                          5789***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.7E-39331495IPR006563POX domain
PfamPF075262.5E-39336494IPR006563POX domain
PROSITE profilePS5007111.92553616IPR001356Homeobox domain
CDDcd000869.05E-13556617No hitNo description
SMARTSM003893.1E-9556620IPR001356Homeobox domain
SuperFamilySSF466898.98E-17558622IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-28559620IPR009057Homeodomain-like
PfamPF059202.3E-17573612IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MDAFMKRKFI SDQSHVAQQS RREKLRVQHQ HRSPSRAGGD RVDDYTSSLE VVQPVFSRDL  60
NQVGDNEINA DVNLMYHPTR ISSEQACSFA GNSTNLVLSG VDGSLRPRRE NYMENCGVWK  120
SVGGSRENAS VGVATDLSAF EMRAKLSTTG QLQSQFQYGE VSFDPQSDYR NALSDEVTTA  180
VAELQSVGGS TCDYWGSYGG NHEHVRIVPY GGYQLDGEPL PNGSTWNGEM SSLHSRIDQM  240
VVDSHSQGLS LSLCSNPATT MVAGSQYGDA RIPQSIPLRT IANISYEENA KAVGRTNFIR  300
TANVGQGDSL QDQVGPSSSY HRQSGPLGPF TGYATILKSS KFLKPAQQLL NEYCGVIGML  360
ASSSTLAVSE RNTGETGELA TAGISIESEV ESTNAGDTSG LSRSAHQDSH EIINGATSSL  420
GPGESHRPDY QLKKAKLLYM LDEVTRRYRQ YYHQMQMVVS AFESVAGLAA ATPYVSSALK  480
TVSRHFNHLK HAISDQLWRI KTFLGENFSS PPSGIRNNKG GDLNAKRLKL NEHYCFQRHS  540
YGGSNMGLLE PQQHIWRPQR GLPERAVSVL KAWLFEHFLH PYPTDTDKHL LATQTGLTRS  600
QVSNWFINAR VRLWKPMVEE IHMLETKGLA ERDSNAVKDD NRSANVDEPH PKADQSLHKM  660
AENSMACVSL ECSGMDEGMT SISRYHQTAH GHEISGIGSV SLTLGLRQSA GNHQQQSVYF  720
HQQQDRMRRH LEGHTVHEYA G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16562619158Homeobox protein Meis1
4xrs_B4e-16562619158Homeobox protein Meis1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.19e-82BEL1-like homeodomain 8