PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0561s0006.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 403aa    MW: 44529.2 Da    PI: 8.2111
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0561s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05217236120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          + C++C+k+F+r  n++ H+
  Kaladp0561s0006.1.p 217 FACSICTKTFNRYNNMQMHM 236
                          78*****************9 PP
2zf-C2H212.30.00052303323323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C +C+ksF  k + ++H +++
  Kaladp0561s0006.1.p 303 CRKCSKSFAVKGDWRTHEKNC 323
                          *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.17E-5212240No hitNo description
PROSITE profilePS5015710.45217244IPR007087Zinc finger, C2H2
SMARTSM003550.27217239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-5217236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
SMARTSM00355240264296IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.8E-5287321No hitNo description
Gene3DG3DSA:3.30.160.603.7E-4288321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035591301321IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MMGFKIISSF YHAVEDAQSD GITMNNSNIN GSVFQSPPAF IEWLKPFPSS PLPTDASSSS  60
SPSSSETQQP QQQHMMVGTP RLADHKPASA SVQCLPLLSK LVEDTSNHTP SSKPVKDEQQ  120
EEVDGDGGFG TLLQDDDKAT VALCIGLSTG TPSDYDLINL YGAGDLRGGA GDKMTSSAVK  180
KRGSSFSDEY AAASSFNSES RFWIPTPAQI MVGPMQFACS ICTKTFNRYN NMQMHMWGHG  240
SEYRKGPESL KGSQPAAMLR LPCYCCAQGC KNNINHPRAK PLKDFRTLQT HFKRKHGSKP  300
FLCRKCSKSF AVKGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIRSFGK GHSPYPPMEG  360
LQFDDKEQCV MAGSSEEDEA MPDYKTLSIR VLAVRRNMEW QN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021716386.11e-134zinc finger protein WIP3-like
SwissprotQ9SGD11e-118ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2R6Q7851e-131A0A2R6Q785_ACTCH; Zinc finger protein
STRINGXP_008378253.11e-131(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-117WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]