PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0587s0005.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 210aa    MW: 22947.1 Da    PI: 10.1938
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0587s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.3e-06181203223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           C+ Cg++F+  +nL++H+ + H
  Kaladp0587s0005.1.p 181 ACSQCGEVFPKLENLEHHQAVrH 203
                          6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.951180208IPR007087Zinc finger, C2H2
PROSITE patternPS000280180203IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MKLAASSSSH SLTSILLSSY CYLLALFFFM ALFTFQQPDP KPNTKKKKKQ KEKEKEKEKQ  60
KQQQPSSSSW DQIKNLLHCK QTEVIIPGKA PVEKQSGSSK NNNGSSNYSC KSICRFGDVV  120
HGTTRVVHRA DNSPEGSSVG RESGRKKIHE SSGRVVGNGS GRSVGGGSCG PYPIPRRTVC  180
ACSQCGEVFP KLENLEHHQA VRHAGMYAF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021970999.14e-40uncharacterized protein LOC110865961
TrEMBLA0A2H5NRZ62e-39A0A2H5NRZ6_CITUN; Uncharacterized protein (Fragment)
TrEMBLA0A2P5F7Z43e-39A0A2P5F7Z4_TREOI; Zinc finger, C2H2 domain containing protein
STRINGGorai.002G123600.12e-36(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-11C2H2-like zinc finger protein