PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0606s0021.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 230aa    MW: 26331.3 Da    PI: 6.0828
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0606s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.24e-18169215148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT eEd llv++v ++G + W+ Ia+ ++ gR +kqc++rw+++l
  Kaladp0606s0021.1.p 169 KGQWTHEEDRLLVQLVDRYGIRKWSIIAQLLP-GRIGKQCRERWHNHL 215
                          799*****************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-24163221IPR009057Homeodomain-like
PROSITE profilePS5129428.758164219IPR017930Myb domain
SuperFamilySSF466895.31E-19166220IPR009057Homeodomain-like
SMARTSM007171.3E-15168217IPR001005SANT/Myb domain
PfamPF002491.3E-16169215IPR001005SANT/Myb domain
CDDcd001674.05E-16172215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDQFGAAKYE EAHPTHQMFV SDTLSKLPTT DGFPFEAVLP LPDNNFLDDN HQPNHQNFNA  60
WASVDKSFDL YQGSYLDPFD TYALESHQTG LSCGMLDRPA NKFYYDYNED IKPLNYVVPD  120
EFSCVTTNVD FTRYSADSNT AQESMIRVTS SVSSARKGPC KGKQSNVIKG QWTHEEDRLL  180
VQLVDRYGIR KWSIIAQLLP GRIGKQCRER WHNHLRPNIK VEFSSIYTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gvd_A8e-21167217151MYB PROTO-ONCOGENE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-37myb domain protein 98