PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0667s0002.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 142aa    MW: 16252.9 Da    PI: 5.5485
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0667s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.9e-132371148
                         HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         l+++++k+lG++ W++Ia +++ gRt++++k++w+ +l
  Kaladp0667s0002.1.p  2 LIKRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNLHL 37
                         7899********.*********.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.023141IPR017930Myb domain
CDDcd001672.18E-8137No hitNo description
SMARTSM007173.8E-5139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-17238IPR009057Homeodomain-like
SuperFamilySSF466899.36E-11242IPR009057Homeodomain-like
PfamPF002491.1E-10237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
DLIKRLHKLL GNRWSLIAGR LPGRTDNEIK NYWNLHLKKR VLGETETNNI PSKHKTSRTS  60
YYEKEPTTSG NNSHECHAGN PNANQIDNEC QAAGNLNANQ INEVDNCFDW SPHISDCSEW  120
VNRLLDLDVE QWLQEDMDIL N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-20myb domain protein 5