PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0671s0004.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 323aa    MW: 35917.9 Da    PI: 8.2982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0671s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12152198455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++N++f  L  ++P +     +K +K ++L  A++Y+k+Lq
  Kaladp0671s0004.1.p 152 DHIMAERKRREKLNQRFVALSAVIPGL-----TKKDKGTVLADATKYVKQLQ 198
                          699***********************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.19E-15147210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.208148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-17152210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-10152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-12153202No hitNo description
SMARTSM003531.0E-12154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDQDQNFTNQ WMVNLHANLS VPIPTAVASD DLQNSNLLYD YQLAIMEAAM EDFQSNTIME  60
QLTTDTWASH DVSNSYSTAA DAASFPYSDW PNPTGVACPS QVNHYYDNRA TQFANNGYTI  120
WNENSVLKAG SETKCKAIRN ISSATRSSEA QDHIMAERKR REKLNQRFVA LSAVIPGLTK  180
KDKGTVLADA TKYVKQLQER IKTLEKQIKS RTMMESAVVV KKTLLAMNDI NKPGFFTKRT  240
LPEEPLPEIE VRFCGKKVLL KVHCNSKKGI TEKILSELAK LNLTVLNSSV LAFGSSALDI  300
TILAQVNFGF NSVNQIKVDL VI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERKRRE
2157162RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9T0723e-44BH025_ARATH; Transcription factor bHLH25
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-46bHLH family protein