PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0674s0011.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 23597.1 Da    PI: 10.1099
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0674s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.21.4e-253686151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien +nrq+tfskRr gilKKA+ELSvLC+aev ++++ss+g+ y ++s
  Kaladp0674s0011.1.p 36 KRIENATNRQITFSKRRYGILKKAFELSVLCEAEVVLLVLSSSGHSYNFAS 86
                         79**********************************************986 PP
2K-box75.11.9e-2511119912100
                K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                          +++e ++ e++ +k++i++L+ +q+h+ Ged++ L l eL+qLe++++++++++RskK ++l e+i+ l++k ++lqeen++L+ kl+e
  Kaladp0674s0011.1.p 111 NTTEFWRCEIEEMKRRIDSLEASQKHFAGEDITVLGLGELKQLERKVKTGVERVRSKKRRILSEHISSLKQKHRALQEENTRLQIKLDE 199
                          56899*******************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.0E-352887IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.2212888IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-2829109IPR002100Transcription factor, MADS-box
CDDcd002651.18E-312999No hitNo description
PRINTSPR004041.4E-263050IPR002100Transcription factor, MADS-box
PfamPF003198.5E-213784IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-265065IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-266586IPR002100Transcription factor, MADS-box
PfamPF014861.9E-22112197IPR002487Transcription factor, K-box
PROSITE profilePS5129713.46113203IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAGNDLICNS SCLACKLAKL ASTSSDKMGR GKVELKRIEN ATNRQITFSK RRYGILKKAF  60
ELSVLCEAEV VLLVLSSSGH SYNFASHNVD RTIARYRNDV GLPQPANQLL NTTEFWRCEI  120
EEMKRRIDSL EASQKHFAGE DITVLGLGEL KQLERKVKTG VERVRSKKRR ILSEHISSLK  180
QKHRALQEEN TRLQIKLDEY GEALRHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-192896169Myocyte-specific enhancer factor 2B
1tqe_Q4e-192896169Myocyte-specific enhancer factor 2B
1tqe_R4e-192896169Myocyte-specific enhancer factor 2B
1tqe_S4e-192896169Myocyte-specific enhancer factor 2B
6c9l_A4e-192896169Myocyte-specific enhancer factor 2B
6c9l_B4e-192896169Myocyte-specific enhancer factor 2B
6c9l_C4e-192896169Myocyte-specific enhancer factor 2B
6c9l_D4e-192896169Myocyte-specific enhancer factor 2B
6c9l_E4e-192896169Myocyte-specific enhancer factor 2B
6c9l_F4e-192896169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022737049.18e-81truncated transcription factor CAULIFLOWER A-like
TrEMBLA0A2R6PSH89e-82A0A2R6PSH8_ACTCH; MADS-box transcription factor (Fragment)
STRINGGorai.007G043400.12e-77(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.18e-33AGAMOUS-like 6