PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0674s0141.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 455aa MW: 48535.2 Da PI: 8.6561

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0674s0141.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.3	1e-30	70	129	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+ Kaladp0674s0141.1.p 70 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVAsSCPVRKQVQRCADDMSILITTYEGTHNHP 129 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-32	56	131	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-27	63	131	IPR003657	WRKY domain
PROSITE profile	PS50811	28.656	65	131	IPR003657	WRKY domain
SMART	SM00774	1.6E-36	70	130	IPR003657	WRKY domain
Pfam	PF03106	6.3E-27	71	129	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MDHTSSTEPL TNNTSADNSL DEEKKEDVMG ETWPPPKTLK RSGEDEIDSH HNNGKRARVS 60 VRARCDTPTM NDGCQWRKYG QKVAKGNPCP RAYYRCTVAS SCPVRKQVQR CADDMSILIT 120 TYEGTHNHPL PAAATAMAST TSAAASMLIS GSSSTSSRPV GLGQSSTSTP ATTTSVGLHG 180 LTYNLANGMT SSQPRPHQFY IHNNSQISPS PNTHPTITLD LTASNPFTSP FANPHFNRFT 240 SSSSYDPSRL FPLKSTSLNF ASMDSNPTPT SMSWATNHGS VLSYGNQYPQ SNNRNNHNLG 300 SLTLASRQPH ESIYQSFMQK TSAALHHQQQ QQHLLPDTIA AATKAITADP SFQTALAAAL 360 TSIIGGGASG GGNNNEKVQV SSMENLGQKM KWGDQVSTQR GSGCASSFLN TSSASNAQSS 420 GMMFLQPSSA ATAASKSKST SPSENNNHQD HNTN*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MDHTSSTEPL TNNTSADNSL DEEKKEDVMG ETWPPPKTLK RSGEDEIDSH HNNGKRARVS  60
VRARCDTPTM NDGCQWRKYG QKVAKGNPCP RAYYRCTVAS SCPVRKQVQR CADDMSILIT  120
TYEGTHNHPL PAAATAMAST TSAAASMLIS GSSSTSSRPV GLGQSSTSTP ATTTSVGLHG  180
LTYNLANGMT SSQPRPHQFY IHNNSQISPS PNTHPTITLD LTASNPFTSP FANPHFNRFT  240
SSSSYDPSRL FPLKSTSLNF ASMDSNPTPT SMSWATNHGS VLSYGNQYPQ SNNRNNHNLG  300
SLTLASRQPH ESIYQSFMQK TSAALHHQQQ QQHLLPDTIA AATKAITADP SFQTALAAAL  360
TSIIGGGASG GGNNNEKVQV SSMENLGQKM KWGDQVSTQR GSGCASSFLN TSSASNAQSS  420
GMMFLQPSSA ATAASKSKST SPSENNNHQD HNTN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-18	54	132	1	78	Probable WRKY transcription factor 4
2ayd_A	9e-19	57	131	1	74	WRKY transcription factor 1
2lex_A	1e-18	54	132	1	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028784111.1	1e-114	probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	2e-82	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A1U7Z4T2	1e-111	A0A1U7Z4T2_NELNU; probable WRKY transcription factor 72
TrEMBL	A0A371I8J3	1e-112	A0A371I8J3_MUCPR; Putative WRKY transcription factor 72 (Fragment)
STRING	XP_010242382.1	1e-112	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	2e-56	WRKY DNA-binding protein 61

Link Out ? help Back to Top
Phytozome	Kaladp0674s0141.1.p

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]