PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0734s0006.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 314aa    MW: 34696.9 Da    PI: 4.6887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0734s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.8e-15119166152
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkk 52 
                          s ykGVr++k +g+W+AeIrd +     +  r++lg++ tae+A ka+ +  ++
  Kaladp0734s0006.1.p 119 SLYKGVRQRK-WGKWAAEIRDpF-----KgVRVWLGTYSTAEDAWKAYQRKELE 166
                          57*******9.**********55.....45*****************9776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.46E-22119167No hitNo description
SuperFamilySSF541711.44E-16119169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-21120172IPR001471AP2/ERF domain
PROSITE profilePS5103219.638120181IPR001471AP2/ERF domain
PfamPF008471.9E-8120162IPR001471AP2/ERF domain
SMARTSM003805.5E-18120187IPR001471AP2/ERF domain
PRINTSPR003677.6E-9121132IPR001471AP2/ERF domain
PRINTSPR003677.6E-9143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MIKPLLVNPN LTVKSASDSA ASSPVRAAAR FSTKSVRKVR IICSDPYATE SSEDEDEYVV  60
KRSKRIVQEI QLPKLGNLKK ERNEELTPTS SGLYGDENKS CGKRRRMASK PAVRRPSGSL  120
YKGVRQRKWG KWAAEIRDPF KGVRVWLGTY STAEDAWKAY QRKELEFKAM AAAIKSHTNL  180
STNEKTDVIA FSNETESGAS NTSSTSTLSE VAGTEKLSGP MEPAIVDGVG EYTIDPLKTS  240
LLDQEISLGL EFDSMFMDAD FSPMFDDFGS VEDFDFLFDG VEDHTDTDLP EFDINIGSTE  300
LAWIEESLNV VCP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-14118184370ATERF1
3gcc_A3e-14118184370ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.26e-36ERF family protein