PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0747s0001.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 364aa    MW: 39605.9 Da    PI: 6.7908
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0747s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12303348655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Kaladp0747s0001.1.p 303 SIAERVRRTKISEKMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 348
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.773297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-16300360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-12301352No hitNo description
Gene3DG3DSA:4.10.280.104.8E-15302358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9303348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDADLQQAHQ FNPIAAGCGL TRYKSAPTSY FSSFVMDYKD VLRPPPPKPL SPQFDRIFAQ  60
LAAEISGDHA LDVEATMPVA KHQIEQPEQL MMASYTPSAA LPPPHPLSRT SSGVDAFYRG  120
LKPSAPPVRI PVVEKQSSGS NLARHNSLPS GLFSQIDVHN VAAAYFGAGS SQANSSTGLM  180
SAYSGIGDDN TKQSNPEEAD DYMINGFWND SPSTKKLLTG VKRERAEDEF LMGGVLDDVK  240
PFSGESSIPG GEAKKPGLLS HHLSLPKSSM EILSAMEKFL ELPDTSVPVG VRARRGCATH  300
PRSIAERVRR TKISEKMRKL QELVPNMDKQ TNTSDMLDLA VDYIKDLQER VQILKACSER  360
CTC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-46bHLH family protein