PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0756s0002.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 198aa    MW: 22763.4 Da    PI: 9.6907
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0756s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-1821111198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv+++ +  +s+r+ +pk f+e +++++ee+   +l  +sg++W+v +   kk  + ++ +GWk F ++n + e Df+vF++ g+++f
  Kaladp0756s0002.1.p  21 FFKVFIRQY--NSDRMLIPKGFMEGIMKQEEEG-CASLVGPSGEKWRVSI--IKKEAKWFIDEGWKVFWEDNSIAETDFLVFTYAGKMKF 105
                          889995555..56789**********7776665.89**************..78888889*************************99999 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +vk+f 
  Kaladp0756s0002.1.p 106 --YVKIFG 111
                          ..999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-2117115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-2017115IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-1419110No hitNo description
PROSITE profilePS5086312.53419113IPR003340B3 DNA binding domain
SMARTSM010194.9E-1321113IPR003340B3 DNA binding domain
PfamPF023624.1E-1621110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSGDDALGGR FKRGEYHRPM FFKVFIRQYN SDRMLIPKGF MEGIMKQEEE GCASLVGPSG  60
EKWRVSIIKK EAKWFIDEGW KVFWEDNSIA ETDFLVFTYA GKMKFYVKIF GPHGCQKPSA  120
HLAKCTKDNR STFTASQQKV RVPEKKPRGR PHLVTAEERR VADLSLQNIH FLLELCTGRL  180
TNHQFCICRE VFSTGML*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.29e-15B3 family protein