PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0756s0011.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 191aa MW: 21459.6 Da PI: 10.0847

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0756s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53	6e-17	92	181	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+++ps+v+ +l l +f+++h + ++ ++tl de+ +++ + ++ + l++GWk+F+ a+gL +gD +vF+l++ + f Kaladp0756s0011.1.p 92 FVKTMLPSHVSGGFWLGLNVSFCKRHLPN--RDSEVTLIDEDDEEYPTVY--LPRKTG--LSGGWKGFAVAHGLTDGDALVFQLIKPTAF 175 89**********************533..5569***********..555544..**********************997888 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v + r Kaladp0756s0011.1.p 176 --KVYITR 181 ..776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.16E-24	85	184	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.9E-22	85	183	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.69E-26	90	181	No hit	No description
Pfam	PF02362	9.5E-15	92	181	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-23	92	183	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.561	92	183	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MFHGCLQMKQ RKPRTVEKKM VPVRRSDRLS DKPGPVYLEV DVARYDRVTI PRRVSKARDL 60 SNRVYASEEE RSYSIKKAEE VQAALDATHP SFVKTMLPSH VSGGFWLGLN VSFCKRHLPN 120 RDSEVTLIDE DDEEYPTVYL PRKTGLSGGW KGFAVAHGLT DGDALVFQLI KPTAFKVYIT 180 RASGFKKTAA *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010520114.1	5e-81	PREDICTED: B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	8e-58	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A1U8KMB4	6e-79	A0A1U8KMB4_GOSHI; B3 domain-containing protein At5g42700-like isoform X1
STRING	XP_010520114.1	2e-80	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-60	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0756s0011.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]