PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0778s0001.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 221aa    MW: 25213.7 Da    PI: 7.9749
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0778s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-154993147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg ++ +Ed+ll +++k+lG++  ++Ia +++ gRt++++k++w+k+
  Kaladp0778s0001.1.p 49 RGEFSLDEDDLLMRLHKLLGNR-RSLIAGRLP-GRTANDVKNHWNKH 93
                         899*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.08E-132198IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-184197IPR009057Homeodomain-like
PROSITE profilePS5129421.464498IPR017930Myb domain
SMARTSM007171.2E-114896IPR001005SANT/Myb domain
PfamPF002494.6E-124993IPR001005SANT/Myb domain
CDDcd001673.04E-95194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MATDDDGARR YGVRKGAWRL NRCRKSCSLR WLNLLYIILG NYPKPYIKRG EFSLDEDDLL  60
MRLHKLLGNR RSLIAGRLPG RTANDVKNHW NKHFRKKTAS GQRFSTDIGK SIIITPTTST  120
AASKEGHDHM TSFDLFSTKE DVLEQMQCWK SLLDDQVSDQ EVAAVSSGSC SVEAQKPENG  180
LTELSFDIEM WDFLDDEWLA VTTRKKMWIA MAFDLSLFDL *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256541.13e-35PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV91e-29MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3G8FWW71e-35A0A3G8FWW7_9SOLA; MYB transcription factor AN2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-30myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]