PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0807s0002.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 148aa    MW: 16895.1 Da    PI: 5.2939
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0807s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.5e-15501311299
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          + + +++pk+ a+e ++ +++  +l+++d + + W +kl+ +  +g++ lt+ W +F +++gLkegD++vF+++g++    +v+++++
  Kaladp0807s0002.1.p  50 Q-HHMTIPKEIAAEKDLYSKS--QLVVRDFKEKLWFMKLS-TAEDGSVNLTEKWASFYESHGLKEGDSCVFEFIGSRI--VHVQIISA 131
                          3.55********999777444..6***************4.77778899***********************998444..48888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.08E-1735131IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.8E-1737132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.08338132IPR003340B3 DNA binding domain
SMARTSM010196.0E-541132IPR003340B3 DNA binding domain
CDDcd100171.86E-1050130No hitNo description
PfamPF023621.9E-1250130IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MRGHGEVELT RKESLFWFED EAKESIEERI APPLSSDRSR FIATWSSTWQ HHMTIPKEIA  60
AEKDLYSKSQ LVVRDFKEKL WFMKLSTAED GSVNLTEKWA SFYESHGLKE GDSCVFEFIG  120
SRIVHVQIIS ASSVMSHAGV EDVLLRD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.17e-06B3 family protein