PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0807s0004.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 431aa    MW: 48280.4 Da    PI: 5.1159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0807s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-13232278455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR++++ +f  Lr+l+P+       K++K++iL  +++Y+k+L+
  Kaladp0807s0004.1.p 232 NHVLAERRRREKLKRRFLVLRSLVPTT-----AKVDKISILDDTIKYLKELE 278
                          6899**********************6.....5****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.323228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-17230291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10232278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-17232292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-14234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDISTVSKRS DDVSTQRPSN STDRVTSALN ILDTQLVVSP HTSTSDPFGL AELDDSFIVE  60
SISEEAVLLQ NWQFMEDDDD LNQYVHDPGN SASKMTLVFA KVNRQSPLKP QECNQMKDTT  120
TGDLLGDEMH YQSVISAILQ TSVVGPHYGD TNKASSFVSF RKEEFAGITK SATPQRILKK  180
VLTQVPKMHS EVLLGPPEKD HKNVIQKGCD DTYLPEAEDL IDMDMPEETG LNHVLAERRR  240
REKLKRRFLV LRSLVPTTAK VDKISILDDT IKYLKELESK IEELESAKET AANTETTMVT  300
KSAQDGTKET SSYNYEVEET HIPSKKRRKA FDTGGNNINC RASSKRECND DLVVEVEEKD  360
VRVEVRCSWR KGLVPEVMEA LSDLDLESTS VCTRSSDGIL YLKITSKAQG LKVASAKLIK  420
QEMERIVRNR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-14225288164Transcription factor MYC2
5gnj_B8e-14225288164Transcription factor MYC2
5gnj_E8e-14225288164Transcription factor MYC2
5gnj_F8e-14225288164Transcription factor MYC2
5gnj_G8e-14225288164Transcription factor MYC2
5gnj_I8e-14225288164Transcription factor MYC2
5gnj_M8e-14225288164Transcription factor MYC2
5gnj_N8e-14225288164Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241ERRRRE
2237242RRRREK
3324328KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.36e-34bHLH family protein