PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0808s0010.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HSF

Protein Properties

Length: 500aa MW: 55135.4 Da PI: 4.4169

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0808s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.5	6.8e-36	38	130	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl k+y++++d+++++++sws+ +nsfvv+++ ef +++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +gkk Kaladp0808s0010.1.p 38 FLCKTYDMVDDPSTDTVVSWSSGNNSFVVWNPPEFGRDLLPKYFKHSNFSSFVRQLNTYGFRKVHPDR---------WEFANEGFLRGKK 118 9**************************************************************999.........********* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll++ikr+k + Kaladp0808s0010.1.p 119 HLLNTIKRRKAS 130 *******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.58E-35	33	127	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.7E-61	34	127	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.5E-38	34	127	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.2E-19	38	61	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.1E-32	38	127	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-19	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	77	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-19	89	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MSNGADGGIS GTCRAESTQS VPAPVPVPMP NPNAPPPFLC KTYDMVDDPS TDTVVSWSSG 60 NNSFVVWNPP EFGRDLLPKY FKHSNFSSFV RQLNTYGFRK VHPDRWEFAN EGFLRGKKHL 120 LNTIKRRKAS QAPTQSQLEQ SQVQSPAATA CVEVGKFGLE EEVEILKRDK NVLMQELVKL 180 RQQQQTTDKQ LQVTMDRLQG VEERQQQLMS FLAKAVQSPG FFSQFVLQQA QNNRLISEAN 240 KKRRLKQDDV TMDYPSSNPG SQIVKYQPFL NEVSTAFLQQ MMEVDNSSQL EFRNNDPDNL 300 FLDDASSSSN GGSSMDGVSK PPIPEVLASS AQFRSPPPSM IPPCGSAGDL VDVQHSSLGA 360 SSEVGRMIHH PPVSSDKQDS SPPSDLQSGP ALPMFTDMVP ESVAENLNDD SIQFDATTFG 420 LDTDLPFGIE SISPGHVPND MSAYEDVWKM LSEEIDSAQL DHLANESEML LVEDELDSSQ 480 NIDHLTDQME LLSSGAEKK*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MSNGADGGIS GTCRAESTQS VPAPVPVPMP NPNAPPPFLC KTYDMVDDPS TDTVVSWSSG  60
NNSFVVWNPP EFGRDLLPKY FKHSNFSSFV RQLNTYGFRK VHPDRWEFAN EGFLRGKKHL  120
LNTIKRRKAS QAPTQSQLEQ SQVQSPAATA CVEVGKFGLE EEVEILKRDK NVLMQELVKL  180
RQQQQTTDKQ LQVTMDRLQG VEERQQQLMS FLAKAVQSPG FFSQFVLQQA QNNRLISEAN  240
KKRRLKQDDV TMDYPSSNPG SQIVKYQPFL NEVSTAFLQQ MMEVDNSSQL EFRNNDPDNL  300
FLDDASSSSN GGSSMDGVSK PPIPEVLASS AQFRSPPPSM IPPCGSAGDL VDVQHSSLGA  360
SSEVGRMIHH PPVSSDKQDS SPPSDLQSGP ALPMFTDMVP ESVAENLNDD SIQFDATTFG  420
LDTDLPFGIE SISPGHVPND MSAYEDVWKM LSEEIDSAQL DHLANESEML LVEDELDSSQ  480
NIDHLTDQME LLSSGAEKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-25	29	130	11	123	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	246	NKKRRLKQ
2	240	245	KKRRLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236740.2	1e-155	heat stress transcription factor 33
Refseq	XP_028208075.1	1e-155	heat shock factor protein HSF8-like
Swissprot	Q84T61	1e-123	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	Q564C8	1e-154	Q564C8_SOYBN; Heat shock factor protein hsf8-related
STRING	GLYMA16G13400.1	1e-154	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-104	heat shock transcription factor A1D

Link Out ? help Back to Top
Phytozome	Kaladp0808s0010.1.p

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]