PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0808s0031.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 384aa    MW: 42530.6 Da    PI: 7.6852
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0808s0031.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.73.7e-14741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C +Cg+ +TplWR+gp  ++ LCnaCG ++r kg+
  Kaladp0808s0031.2.p  7 CCHCGVASTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                         99**************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.3E-7155IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.09E-10545No hitNo description
CDDcd002028.17E-14654No hitNo description
Gene3DG3DSA:3.30.50.103.9E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.6E-12741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.976740IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGKQGPCCHC GVASTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYAPLHA RAEPDDFVDP  60
KEPRIKIAYG KYKEAGSLKR KRTYENAVNG SIASIYNDSF WKAMDDDASN RSSSGSAGSN  120
FESYAYFGTT YDNKLTGPSR SVLVDRMKPA KRRTCIPRPK PSSIATLTKD LCTILHQQQS  180
SRFSEEDLLF ESDRSMFSGE TGHGSYLIRD TSSLTREEDS EATSFSADNK SILGSETCSS  240
PKGLLVHTSS KSVKFQTERH EEAERNTVQS GMSEILGSQG FPLTTINLKD VLNHEEFLRH  300
LTDKEQEQLL RCLPCVDDSS LRSLFDGSHF VDSFSTFHRL ITEGVSNASL PGVRSDDRST  360
FDRLALCNLI KSKSVELFNV MKV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031967.11e-131PREDICTED: GATA transcription factor 26-like
TrEMBLB9N2W61e-129B9N2W6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08080.11e-129(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.32e-91GATA transcription factor 26