PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0808s0041.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 325aa    MW: 35932 Da    PI: 9.6661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0808s0041.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-18176226255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp+ +g  +r++lg++ t  eAa+a+++a+ +l+g
  Kaladp0808s0041.2.p 176 HYRGVRQRP-WGKFAAEIRDPKRRG--ARVWLGTYETDVEAARAYDRAAFELRG 226
                          7********.**********96554..**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.6E-31175235IPR001471AP2/ERF domain
PROSITE profilePS5103223.868176234IPR001471AP2/ERF domain
SMARTSM003802.4E-36176240IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22176236IPR016177DNA-binding domain
PfamPF008479.1E-14176226IPR001471AP2/ERF domain
CDDcd000182.24E-29176234No hitNo description
PRINTSPR003679.4E-13177188IPR001471AP2/ERF domain
PRINTSPR003679.4E-13216236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MNMKLLASIQ EPLLRSKSTF QPNIINQPPI YNNNLPHSTI SHLTSKSHLT PFLNIQLLPL  60
FSMAAAADFS ALQLIKQHLF DGLASPLLKP EPSASQTQMA QIPDSLELDG VYTSLVSSDL  120
GAVDLARRKP SVSSRKPALN ISLPSKTEWN EYAEPTQPQL AAAASKPAPK RSDRRHYRGV  180
RQRPWGKFAA EIRDPKRRGA RVWLGTYETD VEAARAYDRA AFELRGCKAI LNFPLELAQS  240
MDKPPAVGVR RLRSEAEERP EAKKVKTEEG VDGVNEMALT PSSWTAFWDF DDNGNTKSNG  300
MLDWPLTSPL SPHPALGYSQ LIVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-28175237466ATERF1
3gcc_A6e-28175237466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275423.16e-60PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotO803416e-54EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A1U8BFY11e-58A0A1U8BFY1_NELNU; ethylene-responsive transcription factor ERF105-like
STRINGXP_010275423.12e-59(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.15e-55ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]