PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0822s0017.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-X1
Protein Properties Length: 1123aa    MW: 122199 Da    PI: 8.1499
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0822s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.11.5e-07388405118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H C+++CH+GpCp+C
  Kaladp0822s0017.1.p 388 CGNHFCMEICHPGPCPEC 405
                          ****************** PP
2zf-NF-X119.42.3e-06446463118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H C+++CH+G+C pC
  Kaladp0822s0017.1.p 446 CGIHLCKEKCHLGNCAPC 463
                          ****************** PP
3zf-NF-X117.59.1e-06652667116
             zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                          CG+H C ++CH+  C+
  Kaladp0822s0017.1.p 652 CGMHACARTCHPSSCD 667
                          ***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.12E-6146217No hitNo description
PROSITE profilePS500168.992154215IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.671157213IPR001841Zinc finger, RING-type
PROSITE patternPS013590157212IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.023269287IPR000967Zinc finger, NF-X1-type
PfamPF014228.4271286IPR000967Zinc finger, NF-X1-type
CDDcd060082.07E-9314362No hitNo description
SMARTSM004380.021324343IPR000967Zinc finger, NF-X1-type
PfamPF014220.0011326341IPR000967Zinc finger, NF-X1-type
CDDcd060081.26E-7378420No hitNo description
PfamPF014221.4E-5388405IPR000967Zinc finger, NF-X1-type
SMARTSM004381.0E-5388407IPR000967Zinc finger, NF-X1-type
CDDcd060081.43E-13436482No hitNo description
PfamPF014223.7E-4446463IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0012446465IPR000967Zinc finger, NF-X1-type
PfamPF0142219504515IPR000967Zinc finger, NF-X1-type
SMARTSM0043894504534IPR000967Zinc finger, NF-X1-type
CDDcd060088.04E-8532575No hitNo description
PfamPF014220.003542559IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0036542561IPR000967Zinc finger, NF-X1-type
CDDcd060083.60E-6589637No hitNo description
PfamPF014220.29599616IPR000967Zinc finger, NF-X1-type
SMARTSM004380.004599617IPR000967Zinc finger, NF-X1-type
PfamPF014228.3E-4652667IPR000967Zinc finger, NF-X1-type
SMARTSM004380.027652682IPR000967Zinc finger, NF-X1-type
CDDcd060081.48E-4680729No hitNo description
PfamPF0142216684710IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1691712IPR000967Zinc finger, NF-X1-type
PfamPF014241.1E-4824888IPR001374R3H domain
Gene3DG3DSA:3.30.70.3303.1E-4936992IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1123 aa     Download sequence    Send to blast
MSSQVRNDRR RHPTQNSSRQ EWIRRGSVIA TVVNTTQPSA APVVLNPSQA SAPPASLDRI  60
SRSRSSSGGN VGDPSYRSTP RPDNRSSGQF ATRSSKGRPL NQRRDRDRAR ERENRDSGRT  120
ETDRENGRVD TEEVKDASLP LLVQELQEKL AKGSVECMIC YDMVRRSAPI WSCSSCYSIF  180
HLNCIRKWAR APTSVDLIAE KNQGDNWRCP GCQSVQLTTP KEIRYECFCR KRVDPPSDLY  240
LTPHSCGESC GKPFEKEAPV AGNSKDYLCP HVCVLQCHPG PCPPCKAFAP PCLCPCGKKM  300
ITTRCSDRRS VLTCGQRCDR LLDCWRHRCE KVCHVGPCDS CDSMIAASCF CKKRVEVLRC  360
GEMTVKGEVK AEDGVFSCTA SCGKKLGCGN HFCMEICHPG PCPECDLLPS RIKTCCCGKT  420
NLLEQRDSCM DPVPTCQQVC GKQLPCGIHL CKEKCHLGNC APCMTRVTQK CRCGSTSRTV  480
ECFKTTSAEE IFTCDKPCGR KKNCGRHRCS ERCCPLSNSS SNHLVDWDPH FCSMVCGKKL  540
RCGQHSCEAH CHSGYCAPCL ETIFTDLTCA CGRTSLPPPM PCGTPPPSCQ LPCLVPQPCG  600
HPCSHSCHFG DCPPCSVPVS KECVGSHVIL RNIPCGSKDI RCNKLCGKTR QCGMHACART  660
CHPSSCDAPS GSGTSSRASC GQMCGAPRRD CRHTCIAPCH PSDSCPDVRC NFPVTITCSC  720
GRITANVPCD AGGSTSGFSG DFLYEASILQ KWPARLQPVE SNGTKIPLGQ RKLTCDDECA  780
KLERKRVLAD AFDITPPNLE ALHLGENAAL SELLSDLFRR DAKWVMSVEE RCKFLVLGKS  840
QGAASNMKVH VFCPMPKEKR DALRVIAERW KLAINTAGWE PKRFVVVHVT SRSKAPSRTL  900
GVKGSVSSNI LHPPVFDPLI DMDPRLVVSL LDLPRDADIS ALVLRFGGEC ELVWHNDKNA  960
LAVFHDPARA ATAMRRLDHG SVYHGAVTIQ SVGASPASSG ANPWGVGPKS NPWKKATLEE  1020
PCWGEEKEEN SWGGADGSSS STAAGGAKSA WQKKEDPIPS SINRWSVLGS EVGHSSSVVS  1080
VSAKQNGMES HSKSMMPAGQ LGGEPSGANA SEAVDDWEKA YE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081933.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLF6GSQ10.0F6GSQ1_VITVI; Uncharacterized protein
STRINGVIT_17s0000g01920.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1