PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0822s0027.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 166aa    MW: 19176.1 Da    PI: 11.0029
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0822s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-07991163855
                          TS-HHHHHHHHHHHHHHH CS
             Homeobox  38 gLterqVkvWFqNrRake 55 
                          +++ ++V++WFqN++a+e
  Kaladp0822s0027.1.p  99 KIEGKNVFYWFQNHKARE 116
                          89**************97 PP
2Wus_type_Homeobox49.87.9e-17921193764
    Wus_type_Homeobox  37 aeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                           +L++yGkie+kNVfyWFQN+kaRe qk
  Kaladp0822s0027.1.p  92 LQLRRYGKIEGKNVFYWFQNHKARECQK 119
                          58***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.26E-665117IPR009057Homeodomain-like
PfamPF000464.2E-598116IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MHRGGFSRQQ PILSFNARKP RPLIPKPSTS TFPTHPNSFN QHAHCDTTNF FSTNHHISRI  60
NSCCSNLYSV VVSSSRWNPT PEQLRALEDR ALQLRRYGKI EGKNVFYWFQ NHKARECQKR  120
RRQQLENSSS SPKNDQQQTP HHHQNQQTKD QPAGNSHHQS SSTHN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909295.13e-29WUSCHEL-related homeobox 1 isoform X1
RefseqXP_021909296.12e-29WUSCHEL-related homeobox 1 isoform X2
RefseqXP_028097223.11e-29WUSCHEL-related homeobox 4-like
SwissprotQ6X7K06e-21WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A1Q3CUD03e-28A0A1Q3CUD0_CEPFO; Homeobox domain-containing protein
STRINGevm.model.supercontig_3.4029e-29(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-23WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]