PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0844s0025.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 230aa MW: 24890.3 Da PI: 9.162

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0844s0025.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C k++++ L H r+H Kaladp0844s0025.1.p 163 HECPVCYKVYKSGQALGGHKRSH 185 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.59E-8	4	27	No hit	No description
SMART	SM00355	0.062	5	27	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.993	5	32	IPR007087	Zinc finger, C2H2
Pfam	PF13912	9.2E-8	5	27	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.59E-8	158	185	No hit	No description
SMART	SM00355	0.56	163	185	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.4E-12	163	185	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	165	185	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MEEKHKCKLC ARRFGSGRAL GGHMRSHFTI LPVPPKTQPT SLIGTPSSSS EAKNPSQLED 60 SVVLDDESET ESKSLGPSGS RRVGKRSISE WRKLGAIKKS KSKKRSTEQA VSSVSETCSE 120 EDLAMCLMLL SRDKWVRKEC PVGRRNQIFL KNGTGGGGDV KIHECPVCYK VYKSGQALGG 180 HKRSHLFSST STAAAHSSDA DNVWLIDLNL PAPLEDGGDM SHNQIPVLC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6QNN1	6e-40	A0A2R6QNN1_ACTCH; Zinc finger protein
STRING	AES90901	3e-38	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	2e-32	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Kaladp0844s0025.1.p