PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0850s0001.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 169aa MW: 19025.7 Da PI: 10.141

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0850s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54	3.1e-17	7	90	6	94
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 +++d ++++ l lp+kf++++g + ++ ++l+ ++ +W+v++ +k+s++++l+kGW +F+++ g++ g f+vF +d + f +v Kaladp0850s0001.1.p 7 ITADITTRSKLKLPRKFVKRYGANVPR--NVRLQVPTRAEWRVEV--KKNSDGVWLGKGWVKFAESLGIRYGHFLVFDYDVVhDVF--HV 90 5789999999*********888555..6***********..*****************************98653555..55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.435	2	96	IPR003340	B3 DNA binding domain
CDD	cd10017	1.27E-16	3	94	No hit	No description
SuperFamily	SSF101936	3.14E-19	3	103	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.0E-19	3	96	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	3.9E-14	3	96	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.2E-14	7	83	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MKFFRIITAD ITTRSKLKLP RKFVKRYGAN VPRNVRLQVP TRAEWRVEVK KNSDGVWLGK 60 GWVKFAESLG IRYGHFLVFD YDVVHDVFHV LALDMSAVEI EYPTVSSIDD NEEEDLSGSR 120 FALKRPKVEH EDGDVVIVNK DGANLGNKRR AAGQAPSGEP ASKKATPSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49475.1	4e-14	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0850s0001.1.p