PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0878s0051.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 817aa    MW: 89407.5 Da    PI: 6.7125
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0878s0051.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.51.4e-19242341198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++  
  Kaladp0878s0051.2.p 242 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGTPIRIQDAKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSR-- 328
                          99**************************556667788***************9989999999***9.********************4.. PP

                          S.SEE..EEEEE- CS
                   B3  87 r.sefelvvkvfr 98 
                          r  +++lv++ ++
  Kaladp0878s0051.2.p 329 RdPGGKLVIGSRK 341
                          4499999998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-29237342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20239339IPR015300DNA-binding pseudobarrel domain
CDDcd100174.53E-23240337No hitNo description
PROSITE profilePS5086311.462242343IPR003340B3 DNA binding domain
SMARTSM010192.3E-20242342IPR003340B3 DNA binding domain
PfamPF023622.5E-16242341IPR003340B3 DNA binding domain
PROSITE profilePS5105013.487498548IPR011124Zinc finger, CW-type
PfamPF074966.9E-8503545IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MLHYLFENLR AACCKGDEVS NDHSVQVLSN VGGLQPNLGE VRINGDIVGK GKNLQLGKSK  60
IGGDPNGLHQ IQNGESNLSL GTMNGEDQSF GDLSSNFLNL KSQSVGSPHF YIAGSNVTLG  120
VPDGYEAIPQ TSLNIGLSTP PDPSNFSAKF SSGVVEGREL IKLPSPFQQS QRSRVILPKP  180
SKCGLSLSAD ASKGMVQQPR VARPPAEGRG RNQLLPRYWP RITDQELQQL SGDLNSPVVP  240
LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQSEGTPIR IQDAKGKEWT FQFRFWPNNN  300
SRMYVLEGVT PCIQSMQLQA GDTVIFSRRD PGGKLVIGSR KASISSDTQD GDIAALANGA  360
HGESSFSDVS AACGYSGTFQ SMAKNRDPHM HALPEQMTVA DINLGWSKNN RHRGRIIESP  420
IQKSMVKRPK NISSKSRRLL LHAEDVLELK LTWDEAQDLL RAPPSIKPSI VTVEDHEIEE  480
FEEPPVLAKK TIFTVGASGG QEQWAQCDFC SKWRRLPVDV LLPLKWTCAE NFWDSCRCSC  540
SVPDEVGAKE LENLLKHGKD LKRPRTLENH KLVQDHEPSG LDALASAAVL GDNAGEAGET  600
SVGATTKHPR HRPGCTCIVC IQPPSGKGKH HPTCTCNVCM TVKRRFKTLM FRKRIRQSER  660
EAEVSQKEPV LPKENYELTN LKGDSRHEML QSHPVEADAD RTTQNLVQVD QSSDNSDRQL  720
DLNSHPNRGS KCLEQEMNAA VSMTRLVHAA VLPLESHLKQ HGLANSTLDA SGPPQTIEEG  780
DYGVADEDDT VQSGSDIKDE DRSSHANQDQ NVDEKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A6e-702203492131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983612.10.0PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A061GYW30.0A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1
STRINGEOY347050.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]