PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0912s0017.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 328aa    MW: 36833.2 Da    PI: 4.4874
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0912s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-161865148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT +Ede+l + ++++G ++W++ +r  g+ R++k+c++rw +yl
  Kaladp0912s0017.1.p 18 KGPWTSDEDEILTNHINLHGHPNWRALPRLAGLARCGKSCRLRWTNYL 65
                         79********************************************97 PP
2Myb_DNA-binding50.64.5e-1671116148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE+e++++ +++lG++ W++Ia++++ gRt++++k+ w+++l
  Kaladp0912s0017.1.p  71 RGNFTREEEEIIIQSHQLLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 116
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0581365IPR017930Myb domain
SuperFamilySSF466892.57E-2815112IPR009057Homeodomain-like
SMARTSM007173.8E-111767IPR001005SANT/Myb domain
PfamPF002493.4E-131865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-211972IPR009057Homeodomain-like
CDDcd001674.82E-102065No hitNo description
PROSITE profilePS5129424.01666120IPR017930Myb domain
SMARTSM007171.6E-1470118IPR001005SANT/Myb domain
PfamPF002492.5E-1471116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2573120IPR009057Homeodomain-like
CDDcd001673.57E-1173116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSKFSVEQYL SYLASLKKGP WTSDEDEILT NHINLHGHPN WRALPRLAGL ARCGKSCRLR  60
WTNYLQPGIK RGNFTREEEE IIIQSHQLLG NRWSAIAAKL PGRTDNEIKN VWHTHLKKKV  120
LKRNEPQGSA ATTDDSSNNS DFIIVDESIF HQAWDDHSRP SMDPINQHAH ADQTENNNPN  180
DAPACNTLYV PSFSPPQESY SEASYNNYNE VPSPEEFPET DETFWSDVLS SDFDNYSGSG  240
SSSMENCYPC YQQQPVSGFP FSSLVSDSNN VVNEMDPKEE TTAASNSFAS NVEANNVSGS  300
KTVVEDVDDF WFDVLFRAGE HPVLLDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-271612025128MYB TRANSFORMING PROTEIN
1mse_C6e-27161202105C-Myb DNA-Binding Domain
1msf_C6e-27161202105C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.13e-61myb domain protein 13