PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0921s0018.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CPP

Protein Properties

Length: 909aa MW: 99654.5 Da PI: 7.2151

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0921s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.2	9.3e-15	502	541	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 e+++C+Ck+s+Clk+YCeCf ag++C+ +C+C++C+Nk e Kaladp0921s0018.1.p 502 ECRRCSCKRSRCLKLYCECFVAGAYCAGSCSCQGCSNKPE 541 6899*********************************975 PP
2	TCR	50.6	3.9e-16	590	627	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k+gCnCkks ClkkYCeC++a++ Cs+ C+Ce+CkN+ Kaladp0921s0018.1.p 590 KRGCNCKKSMCLKKYCECYQANVGCSDGCRCEGCKNTF 627 78**********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.9E-13	501	542	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	32.3	502	628	IPR005172	CRC domain
Pfam	PF03638	1.4E-10	504	539	IPR005172	CRC domain
SMART	SM01114	1.3E-17	588	629	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.1E-11	590	626	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 909 aa Download sequence Send to blast
MDPDPAAAPA VPPAGAAELE SADVRDSAVF DYISNLSPLL PEQPPNLAKD FTGLPSSTAA 60 FTSPQPNEAN KTSFGTRPQH SQFTVADEST FDIAVQPQLP FKSARLINGV NSSDNNSGSD 120 VTLQAQPVLS FDSVDGCSDS QEEMDSSILH PADKTEADDE PKSVQSVTCN LSNSNNLLDA 180 LKDFMEEVNK DLDHSNFPEE TRLDLTKKHE INCELVRNEH LYQHGDITSD SAYTHADLYH 240 QSKEPIVNQN EDTKCHGFRG QLGHELLSGL QVFNNSHENP TKFVNKPMRK LMLSDFKASD 300 KRRGMLRRCL QFENSMDCPK SQHSKMSGSN LQQFPVSTTP KLTMDRYQSS GSSFSSQAGK 360 SPTINILKGK GIGLHLNSLV RTLPPAPASA PDHKEMHDAS IKPLILANVK QTQLTQGETK 420 IFKGVVSQSV NMIHGNEGSA DIMSNCLSSH GANGFLLNKA KRTESESRLG KRKLRSVQHD 480 SFDNLNESRS KRERTESFAT GECRRCSCKR SRCLKLYCEC FVAGAYCAGS CSCQGCSNKP 540 EFEEIVSETR NLILSRNPLA FSSKVEETVS ESLPNNVNII QLAPSAPRLK RGCNCKKSMC 600 LKKYCECYQA NVGCSDGCRC EGCKNTFGRK AGCGHDDSQK RSLSRHVQEF EGACDENMEV 660 CTMKTIITQT DFSNLQYHEL VTPSLHPPEH CVSVPLSGHL SLGSLSSPDS CMIPCNDKVL 720 KPPPTALHDM LLTSSTSSSH QISYEWESDT NSSEKATNLQ PSYDADKYCQ SRNTSPAQFV 780 KSKDFSAPSV TRALNKPLRT KLSQDNRLSL AGWSRAPTIL GHSIEAESQT LDHSPPVNVI 840 NLRSPNGRQV SQRRPLALHN LGLSSSFVIK SARKFILKSV PTSQAPPSVD AKYNGEKRNS 900 ESEDGCKT*

Sequence ? help Back to Top

Protein Sequence Length: 909 aa Download sequence Send to blast

MDPDPAAAPA VPPAGAAELE SADVRDSAVF DYISNLSPLL PEQPPNLAKD FTGLPSSTAA  60
FTSPQPNEAN KTSFGTRPQH SQFTVADEST FDIAVQPQLP FKSARLINGV NSSDNNSGSD  120
VTLQAQPVLS FDSVDGCSDS QEEMDSSILH PADKTEADDE PKSVQSVTCN LSNSNNLLDA  180
LKDFMEEVNK DLDHSNFPEE TRLDLTKKHE INCELVRNEH LYQHGDITSD SAYTHADLYH  240
QSKEPIVNQN EDTKCHGFRG QLGHELLSGL QVFNNSHENP TKFVNKPMRK LMLSDFKASD  300
KRRGMLRRCL QFENSMDCPK SQHSKMSGSN LQQFPVSTTP KLTMDRYQSS GSSFSSQAGK  360
SPTINILKGK GIGLHLNSLV RTLPPAPASA PDHKEMHDAS IKPLILANVK QTQLTQGETK  420
IFKGVVSQSV NMIHGNEGSA DIMSNCLSSH GANGFLLNKA KRTESESRLG KRKLRSVQHD  480
SFDNLNESRS KRERTESFAT GECRRCSCKR SRCLKLYCEC FVAGAYCAGS CSCQGCSNKP  540
EFEEIVSETR NLILSRNPLA FSSKVEETVS ESLPNNVNII QLAPSAPRLK RGCNCKKSMC  600
LKKYCECYQA NVGCSDGCRC EGCKNTFGRK AGCGHDDSQK RSLSRHVQEF EGACDENMEV  660
CTMKTIITQT DFSNLQYHEL VTPSLHPPEH CVSVPLSGHL SLGSLSSPDS CMIPCNDKVL  720
KPPPTALHDM LLTSSTSSSH QISYEWESDT NSSEKATNLQ PSYDADKYCQ SRNTSPAQFV  780
KSKDFSAPSV TRALNKPLRT KLSQDNRLSL AGWSRAPTIL GHSIEAESQT LDHSPPVNVI  840
NLRSPNGRQV SQRRPLALHN LGLSSSFVIK SARKFILKSV PTSQAPPSVD AKYNGEKRNS  900
ESEDGCKT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-13	506	625	14	120	Protein lin-54 homolog
5fd3_B	4e-13	506	625	14	120	Protein lin-54 homolog

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	2e-37	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Kaladp0921s0018.1.p