PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0965s0007.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 280aa MW: 30556.5 Da PI: 5.7443

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0965s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.1	5e-10	80	137	3	60
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ++kr +r NR++A rs +RK +i+eLe+kv +L++e ++L +l + + l Kaladp0965s0007.1.p 80 DSKRVKRILANRLSAARSKERKARYIAELEQKVRALQTEATTLSAQLTLFQRDILGLS 137 689*****************************************99988777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.0E-14	78	142	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.6E-8	79	132	No hit	No description
PROSITE profile	PS50217	10.392	80	143	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.3E-8	81	129	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.93E-10	82	134	No hit	No description
CDD	cd14703	3.84E-23	83	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MGVLSSSSLS SHVNNINKNN DKTGGGGCHQ DEQAGGHDLF ATYIDLDKLA MLETGGGGEL 60 VMEAKKAMPP DKLAELWTND SKRVKRILAN RLSAARSKER KARYIAELEQ KVRALQTEAT 120 TLSAQLTLFQ RDILGLSAEN NELKLQLQAM EQQAQLQHAL NEALMQEAEM LNIVTGELCC 180 PNQPDSSFNL GVPPPHAFST YHHHPPVGVH VDFVLPQQQG LSGECMQKDD PLGQLQGLVI 240 HSIVTTDKIV KSSEARITET CESNVHCFTA NEQISCTVY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018835707.1	8e-70	PREDICTED: transcription factor RF2b-like
Swissprot	Q6S4P4	3e-54	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2I4FVN5	2e-68	A0A2I4FVN5_JUGRE; transcription factor RF2b-like
STRING	EOY34701	4e-64	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-41	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kaladp0965s0007.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]