PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp1153s0008.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 248aa    MW: 27672.1 Da    PI: 8.7649
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp1153s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-1978126355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+g
  Kaladp1153s0008.1.p  78 YRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAATAYDTAAYILRG 126
                          9******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-2277135IPR016177DNA-binding domain
SMARTSM003804.2E-3477140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3277136IPR001471AP2/ERF domain
PROSITE profilePS5103222.81377134IPR001471AP2/ERF domain
PRINTSPR003672.2E-117889IPR001471AP2/ERF domain
CDDcd000185.61E-2278136No hitNo description
PfamPF008477.4E-1278125IPR001471AP2/ERF domain
PRINTSPR003672.2E-11100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVSSAASTSL FFPIWPQYET QPSTTDWPEI SQTSTSHQSN DGSREFWLSA RKTQPMKYTT  60
GGKMQQKAST STSQGKAYRG VRQRHWGKWV AEIRLPRNRT RVWLGTFDTA EDAATAYDTA  120
AYILRGDYAQ LNFPDQKHQL NSNSLSGSTK ALLEAKLQAI ESQAQRKKTI EDPASLQSSE  180
TSQISLKNSS MEDLKLKVLR EVPLKKELIE LDNKFSGEVL GDMEGGGGIQ LSRMPSLDMD  240
MIWDAIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2173134163ATERF1
3gcc_A4e-2173134163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323984.33e-73ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ03e-63ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA9PL938e-72A9PL93_POPTR; RAP2-like protein
STRINGPOPTR_0017s08250.11e-72(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.19e-53ERF family protein